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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
total RNA-seq
5
STARR-seq
1
ATAC-seq
1
Hi-C
1
whole genome sequencing assay
Assay category
DNA binding
10
Transcription
1
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Date released
17
August, 2021
1
March, 2019
Available data
10
tsv
2
bedpe bed3+
hic
1
bedpe
1
vcf
Organism
18
Homo sapiens
Biosample type
15
cell line
3
tissue
Organ
12
liver
3
pancreas
2
kidney
Project
18
AMP
Genome assembly (visualization)
1
GRCh38
1
hg19
Lab
2237
AMP-T2D consortium
Klaus Kaestner, Upenn
189
Kyle Gaulton, UCSD
141
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
18
Bing Ren, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
assay_slims!
DNA binding
files.file_type!
hic
lab.title!
Klaus Kaestner, Upenn
BIOSAMPLE
ASSAY
18 results
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total RNA-seq
STARR-seq
ATAC-seq
Hi-C
whole genome sequencing assay
cell line
HepG2
9
2
1
HEK293T
2
Synthesized DNA
1
tissue
islet of Langerhans
1
1
1
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