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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ATAC-seq
12
DNase-seq
9
total RNA-seq
6
single cell RNA-seq
5
Hi-C
4
WGBS
2
pCHi-C
1
FAIRE-seq
1
RRBS
Assay category
DNA binding
52
DNA accessibility
15
Transcription
5
3D chromatin structure
5
DNA methylation
Date released
February, 2021
35
February, 2023
12
July, 2019
7
June, 2019
7
October, 2019
6
August, 2021
5
March, 2020
3
February, 2020
3
November, 2018
1
October, 2017
Available data
52
bed narrowPeak
28
bigWig
27
bam
17
tsv
14
bed bed3+
13
bigBed narrowPeak
12
bed broadPeak
12
bigBed broadPeak
4
bed bedMethyl
4
bigBed bedMethyl
4
fastq
3
hic
2
bedpe bed3+
2
hdf5
1
tar
Organism
79
Homo sapiens
Biosample type
65
tissue
14
primary cell
Organ
696
pancreas
363
epithelium
294
kidney
236
liver
199
heart
76
connective tissue
74
vasculature
71
blood vessel
68
brain
57
musculature of body
56
eye
50
limb
47
artery
32
adipose tissue
20
lung
18
ureter
15
embryo
9
blood
9
bodily fluid
9
bone element
8
nerve
8
skeleton
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
79
AMP
Genome assembly (visualization)
60
GRCh38
28
hg19
Lab
79
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
assay_slims!
DNA binding
files.file_type!
ibed
month_released!
February, 2021
BIOSAMPLE
ASSAY
79 results
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ATAC-seq
DNase-seq
total RNA-seq
single cell RNA-seq
Hi-C
WGBS
pCHi-C
FAIRE-seq
RRBS
tissue
coronary artery
36
2
1
aorta
1
4
1
2
1
spleen
1
1
2
1
tibial artery
1
2
1
ascending aorta
1
2
+ See 2 more…
primary cell
endothelial cell of umbilical vein
2
2
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
endothelial cell of coronary artery
1
endothelial cell of hepatic sinusoid
1
+ See 3 more…
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