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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
344
total RNA-seq
103
ATAC-seq
80
single cell RNA-seq
11
snATAC-seq
10
MeRIP-seq
8
DNase-seq
6
Hi-C
4
WGBS
2
Capture-C
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
426
Transcription
DNA binding
124
DNA accessibility
6
3D chromatin structure
6
DNA methylation
Target of assay
5
control
5
nucleotide modification
Date released
157
July, 2018
94
August, 2017
57
May, 2021
42
November, 2019
40
September, 2018
39
April, 2018
26
February, 2021
24
May, 2022
19
February, 2023
11
March, 2020
10
November, 2020
8
January, 2021
7
November, 2018
6
July, 2019
5
March, 2019
5
October, 2017
5
October, 2019
5
September, 2017
4
August, 2021
4
June, 2019
3
August, 2018
2
October, 2018
1
August, 2022
1
February, 2020
1
June, 2018
Available data
491
bam
452
bigWig
411
tsv
255
fastq
74
bed narrowPeak
32
bigBed narrowPeak
9
bed broadPeak
8
bed bed3+
7
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
4
bedpe bed3+
4
hic
1
bedpe
1
hdf5
Organism
575
Homo sapiens
Biosample type
388
tissue
124
primary cell
64
cell line
Organ
576
pancreas
531
connective tissue
418
adipose tissue
302
kidney
259
heart
243
epithelium
239
liver
159
bone element
134
vasculature
131
blood vessel
107
artery
68
brain
57
musculature of body
56
eye
56
limb
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
546
AMP
30
T1D
Genome assembly (visualization)
492
hg19
468
GRCh38
Lab
507
AMP-T2D consortium
Klaus Kaestner, Upenn
51
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
66
inconsistent ontology term
1
audit script error
Audit category:
1
inconsistent assembly
assay_slims!
DNA binding
files.file_type!
tagAlign
lab.title!
Klaus Kaestner, Upenn
target.investigated_as!
recombinant protein
BIOSAMPLE
ASSAY
576 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
MeRIP-seq
DNase-seq
Hi-C
WGBS
Capture-C
FAIRE-seq
RRBS
small RNA-seq
CRISPR genome editing followed by sgRNA sequencing
pCHi-C
tissue
islet of Langerhans
278
58
6
7
4
1
3
1
1
body of pancreas
3
4
4
2
2
pancreas
2
4
2
1
2
1
1
1
primary cell
pancreatic beta cell
10
7
12
pancreatic alpha cell
10
6
12
pancreatic acinar cell
4
5
12
pancreatic ductal cell
4
4
10
pancreatic delta cell
11
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cell line
EndoC_BH1
33
19
6
1
2
1
Panc1
1
1
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