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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
47
ATAC-seq
30
DNase-seq
8
WGBS
2
Hi-C
2
RRBS
1
single cell RNA-seq
Assay category
DNA binding
77
DNA accessibility
10
DNA methylation
2
3D chromatin structure
1
Transcription
Date released
36
February, 2023
30
June, 2019
14
July, 2019
8
February, 2021
2
March, 2020
October, 2019
Available data
tsv
116
bam
108
bigWig
77
bed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
30
bigBed narrowPeak
8
bed bedMethyl
8
bigBed bedMethyl
2
bedpe bed3+
2
hic
Organism
90
Homo sapiens
Biosample type
78
tissue
8
cell line
4
primary cell
Organ
305
pancreas
275
kidney
231
epithelium
101
bone element
90
heart
64
liver
59
vasculature
56
blood vessel
50
connective tissue
48
musculature of body
46
artery
43
limb
41
brain
32
eye
19
lung
18
ureter
16
adipose tissue
16
skeleton
9
blood
9
bodily fluid
4
spleen
1
bone marrow
1
embryo
1
pericardium
1
thymus
1
vein
Project
90
AMP
Genome assembly (visualization)
83
GRCh38
43
hg19
Lab
90
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
assay_slims!
DNA binding
files.file_type!
tsv
lab.title!
Maike Sander, UCSD
month_released!
October, 2019
BIOSAMPLE
ASSAY
90 results
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ATAC-seq
DNase-seq
WGBS
Hi-C
RRBS
single cell RNA-seq
tissue
coronary artery
36
2
heart
18
1
1
heart left ventricle
2
3
4
1
1
heart right ventricle
1
2
1
right atrium auricular region
1
2
+ See 2 more…
cell line
smooth muscle cell of the coronary artery
8
primary cell
cardiac fibroblast
3
1
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