Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
36
ATAC-seq
27
snATAC-seq
15
single cell RNA-seq
9
DNase-seq
7
WGBS
2
pCHi-C
1
FAIRE-seq
Assay category
DNA binding
73
DNA accessibility
15
Transcription
7
DNA methylation
Date released
200
May, 2022
189
February, 2023
187
June, 2019
153
August, 2021
148
February, 2021
102
May, 2020
61
May, 2021
59
September, 2020
56
October, 2019
47
September, 2023
43
July, 2019
28
November, 2019
26
August, 2017
19
April, 2020
18
November, 2018
16
January, 2021
16
March, 2020
15
May, 2023
15
September, 2018
12
November, 2020
8
January, 2018
8
October, 2017
7
August, 2020
5
March, 2019
5
March, 2023
5
September, 2017
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
December, 2018
1
December, 2019
Available data
621
bam
603
bigWig
tsv
104
fastq
89
txt
42
bed narrowPeak
24
bigBed narrowPeak
11
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
8
csv
7
bed bedMethyl
7
bigBed bedMethyl
4
bed bedgraph
2
bed bed3
Organism
181
Homo sapiens
Biosample type
109
tissue
57
primary cell
11
cell line
4
in vitro differentiated cells
Organ
92
bone element
21
pancreas
14
epithelium
8
artery
8
blood vessel
8
heart
8
skeleton
8
vasculature
7
connective tissue
7
liver
6
limb
3
spleen
2
brain
1
adipose tissue
Project
142
AMP
39
HPAP
Genome assembly (visualization)
48
GRCh38
48
hg19
Lab
142
AMP-T2D consortium
39
Klaus Kaestner, Upenn
Audit category:
84
inconsistent ontology term
27
audit script error
1
inconsistent replicate
assay_slims!
DNA binding
files.file_type!
tsv
BIOSAMPLE
ASSAY
181 results
search-icon
table-tab-icon
Clear Filters
RNA microarray
ATAC-seq
snATAC-seq
single cell RNA-seq
DNase-seq
WGBS
pCHi-C
FAIRE-seq
tissue
bone element
84
body of pancreas
2
2
liver
1
2
pancreas
2
1
spleen
1
2
+ See 11 more…
primary cell
Langerhans cell
27
12
pancreatic beta cell
4
pancreatic ductal cell
4
pancreatic acinar cell
3
pancreatic alpha cell
3
+ See 2 more…
cell line
smooth muscle cell of the coronary artery
8
HepG2
1
1
1
in vitro differentiated cells
adipocyte
4
See all biosamples
Download