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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
330
total RNA-seq
104
ATAC-seq
80
single cell RNA-seq
45
WGBS
8
DNase-seq
2
FAIRE-seq
2
small RNA-seq
1
Hi-C
Assay category
412
Transcription
DNA binding
114
DNA accessibility
45
DNA methylation
1
3D chromatin structure
Date released
153
July, 2018
104
May, 2022
94
August, 2017
40
May, 2021
40
November, 2019
40
September, 2018
39
April, 2018
26
February, 2021
7
November, 2018
5
September, 2017
4
July, 2019
4
June, 2019
4
October, 2017
3
August, 2018
3
March, 2020
2
March, 2019
2
October, 2018
1
June, 2018
1
October, 2019
Available data
491
bam
462
bigWig
417
tsv
324
fastq
80
zippedFastqFolder
74
bed narrowPeak
32
bigBed narrowPeak
9
bed broadPeak
8
bed bed3+
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
Organism
572
Homo sapiens
Biosample type
333
tissue
204
primary cell
35
cell line
Organ
572
pancreas
491
connective tissue
405
adipose tissue
268
epithelium
171
liver
118
heart
92
kidney
83
vasculature
81
blood vessel
68
artery
66
bone element
49
limb
47
brain
40
musculature of body
18
ureter
14
embryo
8
skeleton
7
nerve
4
eye
4
spleen
3
vein
1
pericardium
Project
490
AMP
80
HPAP
2
T1D
Genome assembly (visualization)
479
hg19
464
GRCh38
Lab
466
AMP-T2D consortium
80
Klaus Kaestner, Upenn
24
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
1
Mark McCarthy, Oxford
Audit category:
39
inconsistent ontology term
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
572 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
DNase-seq
FAIRE-seq
small RNA-seq
Hi-C
tissue
islet of Langerhans
266
38
6
1
1
1
body of pancreas
2
4
2
4
2
pancreas
1
2
2
1
primary cell
pancreatic alpha cell
10
28
12
25
pancreatic beta cell
10
20
12
16
pancreatic acinar cell
4
9
12
pancreatic ductal cell
4
4
10
pancreatic delta cell
11
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cell line
EndoC_BH1
33
1
Panc1
1
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