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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
200
DNase-seq
23
ATAC-seq
5
FAIRE-seq
4
Hi-C
2
total RNA-seq
1
pCHi-C
1
snATAC-seq
Assay category
DNA binding
229
DNA accessibility
4
3D chromatin structure
2
Transcription
Date released
181
June, 2019
14
September, 2018
10
October, 2019
9
November, 2018
8
August, 2017
5
July, 2019
5
September, 2017
2
May, 2021
1
February, 2021
1
May, 2022
Available data
1318
bam
1279
bigWig
1117
tsv
485
fastq
475
bed narrowPeak
228
bigBed narrowPeak
204
bed bed3+
199
bed broadPeak
197
bigBed broadPeak
161
txt
153
zippedFastqFolder
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
23
hic
22
bedpe bed3+
8
csv
6
bed bed3
4
hdf5
3
bed bedgraph
3
cool
2
ibed
1
bedpe
1
tar
1
vcf
Organism
236
Homo sapiens
Biosample type
181
tissue
51
primary cell
4
cell line
Organ
80
kidney
42
epithelium
36
brain
36
limb
34
musculature of body
33
pancreas
30
heart
connective tissue
18
ureter
14
vasculature
12
blood vessel
8
liver
4
adipose tissue
4
artery
4
eye
3
vein
2
nerve
1
spleen
Project
236
AMP
Genome assembly (visualization)
222
GRCh38
214
hg19
Lab
234
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
1
audit script error
Audit category:
1
inconsistent assembly
assay_slims!
DNA binding
month_released!
January, 2019
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
236 results
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Clear Filters
DNase-seq
ATAC-seq
FAIRE-seq
Hi-C
total RNA-seq
pCHi-C
snATAC-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
1
muscle of leg
13
+ See 40 more…
primary cell
pancreatic beta cell
7
pancreatic alpha cell
6
pancreatic acinar cell
5
pancreatic ductal cell
4
endothelial cell of umbilical vein
2
1
+ See 20 more…
cell line
Panc1
1
1
HepG2
1
glomerular visceral epithelial cell
1
See all biosamples
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