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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
9
DNase-seq
8
ATAC-seq
2
Capture-C
1
Hi-C
1
pCHi-C
Assay category
DNA binding
17
DNA accessibility
1
3D chromatin structure
Date released
6
June, 2019
4
February, 2023
3
October, 2019
2
August, 2017
2
August, 2021
1
February, 2021
1
July, 2019
1
November, 2018
1
November, 2020
Available data
495
bigWig
491
bam
478
tsv
17
bed narrowPeak
16
bed bed3+
13
bigBed narrowPeak
11
fastq
9
bed broadPeak
9
bigBed broadPeak
6
bed bed3
4
bed bedgraph
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
1
hdf5
Organism
21
Homo sapiens
Biosample type
9
in vitro differentiated cells
8
primary cell
4
tissue
Organ
80
kidney
42
epithelium
36
brain
36
limb
34
musculature of body
33
pancreas
30
heart
21
connective tissue
18
ureter
14
vasculature
12
blood vessel
8
liver
4
adipose tissue
4
artery
4
eye
3
vein
2
nerve
1
spleen
Project
21
AMP
Genome assembly (visualization)
20
hg19
10
GRCh38
Lab
19
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
assay_slims!
DNA binding
month_released!
January, 2019
BIOSAMPLE
ASSAY
21 results
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DNase-seq
ATAC-seq
Capture-C
Hi-C
pCHi-C
in vitro differentiated cells
adipocyte
1
3
1
immature adipocyte
2
osteoblast
1
preadipocyte
1
primary cell
cardiac fibroblast
3
brain pericyte
1
1
osteoblast
1
1
hepatic stellate cell
1
tissue
omental fat pad
2
adipose tissue
1
subcutaneous adipose tissue
1
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