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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
116
ATAC-seq
Assay category
116
DNA accessibility
DNA binding
Date released
66
August, 2021
30
February, 2023
20
May, 2022
Available data
bam
1669
bigWig
1432
tsv
501
fastq
415
bed narrowPeak
211
bigBed narrowPeak
190
bed bed3+
178
bed broadPeak
176
bigBed broadPeak
161
txt
153
zippedFastqFolder
64
xls
28
bed bedMethyl
28
bigBed bedMethyl
20
bedpe bed3+
20
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
3
cool
ibed
1
bedpe
1
tar
1
vcf
Organism
116
Homo sapiens
Biosample type
112
tissue
4
in vitro differentiated cells
Organ
64
kidney
35
artery
35
blood vessel
heart
35
vasculature
27
eye
20
liver
12
epithelium
3
connective tissue
1
adipose tissue
Project
116
AMP
Genome assembly (visualization)
64
GRCh38
52
hg19
Lab
64
Katalin Susztak, Upenn
28
AMP-T2D consortium
20
Karen Mohlke, UNC
4
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
assay_slims!
DNA binding
files.file_type!
bam
ibed
organ_slims!
heart
BIOSAMPLE
ASSAY
116 results
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Clear Filters
ATAC-seq
tissue
kidney
64
liver
20
retina
15
pigmented layer of retina
12
adipose tissue
1
in vitro differentiated cells
adipocyte
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
osteoblast
1
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