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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
DNase-seq
1
whole genome sequencing assay
Assay category
195
DNA accessibility
DNA binding
1
DNA sequencing
Date released
180
June, 2019
9
November, 2018
3
October, 2019
2
August, 2017
1
August, 2021
1
November, 2020
Available data
1731
bam
1703
bigWig
1532
tsv
501
fastq
434
bed narrowPeak
229
bigBed narrowPeak
207
bed bed3+
197
bed broadPeak
195
bigBed broadPeak
161
txt
153
zippedFastqFolder
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
21
bedpe bed3+
20
hic
12
bed bed3
8
csv
7
bed bedgraph
3
cool
3
hdf5
2
ibed
1
bedpe
1
vcf
Organism
196
Homo sapiens
Biosample type
171
tissue
22
primary cell
2
cell line
1
in vitro differentiated cells
Organ
78
kidney
36
limb
33
musculature of body
32
brain
30
heart
18
ureter
16
epithelium
vasculature
9
blood vessel
9
connective tissue
7
pancreas
6
liver
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
196
AMP
Genome assembly (visualization)
194
GRCh38
173
hg19
Lab
195
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
3
inconsistent ontology term
assay_slims!
DNA binding
files.file_type!
tagAlign
organ_slims!
vasculature
BIOSAMPLE
ASSAY
196 results
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Clear Filters
DNase-seq
whole genome sequencing assay
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 36 more…
primary cell
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
+ See 13 more…
cell line
HepG2
1
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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