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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ATAC-seq
4
FAIRE-seq
1
DNase-seq
Assay category
DNA binding
27
DNA accessibility
Date released
14
September, 2018
August, 2017
5
October, 2019
5
September, 2017
2
July, 2019
1
November, 2018
Available data
1713
bam
1670
bigWig
1511
tsv
482
bed narrowPeak
390
fastq
231
bigBed narrowPeak
220
bed bed3+
206
bed broadPeak
bigBed broadPeak
161
txt
153
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
3
cool
2
ibed
1
bedpe
1
tar
1
vcf
Organism
27
Homo sapiens
Biosample type
20
primary cell
4
tissue
2
in vitro differentiated cells
1
cell line
Organ
21
epithelium
20
pancreas
3
connective tissue
2
kidney
1
adipose tissue
1
blood vessel
1
brain
1
vasculature
1
vein
Project
27
AMP
Genome assembly (visualization)
27
hg19
20
GRCh38
Lab
27
AMP-T2D consortium
assay_slims!
DNA binding
files.file_type!
bigBed broadPeak
month_released!
August, 2017
January, 2018
BIOSAMPLE
ASSAY
27 results
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ATAC-seq
FAIRE-seq
DNase-seq
primary cell
pancreatic beta cell
6
pancreatic alpha cell
5
pancreatic acinar cell
4
pancreatic ductal cell
4
endothelial cell of umbilical vein
1
tissue
adipose tissue
1
frontal cortex
1
kidney
1
pancreas
1
in vitro differentiated cells
adipocyte
2
cell line
glomerular visceral epithelial cell
1
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