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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
209
DNase-seq
27
ATAC-seq
5
FAIRE-seq
3
Hi-C
Assay category
DNA binding
241
DNA accessibility
3
3D chromatin structure
Date released
187
June, 2019
14
September, 2018
12
October, 2019
10
August, 2017
10
November, 2018
5
September, 2017
3
October, 2022
2
July, 2019
1
November, 2020
Available data
1789
bam
1762
bigWig
1477
tsv
501
fastq
416
bed narrowPeak
241
bigBed narrowPeak
218
bed bed3+
208
bed broadPeak
206
bigBed broadPeak
153
zippedFastqFolder
104
txt
36
bed bedMethyl
36
bigBed bedMethyl
21
bedpe bed3+
21
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
3
cool
2
ibed
1
bedpe
1
tar
Organism
244
Homo sapiens
Biosample type
184
tissue
55
primary cell
3
in vitro differentiated cells
2
cell line
Organ
80
kidney
43
epithelium
36
limb
35
pancreas
33
brain
33
musculature of body
30
heart
18
ureter
13
connective tissue
12
vasculature
10
blood vessel
6
liver
4
adipose tissue
4
artery
4
eye
3
vein
2
nerve
1
spleen
Project
241
AMP
3
HPAP
Genome assembly (visualization)
231
GRCh38
221
hg19
Lab
241
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
4
inconsistent ontology term
3
audit script error
assay_slims!
DNA binding
month_released!
August, 2021
BIOSAMPLE
ASSAY
244 results
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DNase-seq
ATAC-seq
FAIRE-seq
Hi-C
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
1
muscle of leg
13
+ See 42 more…
primary cell
pancreatic beta cell
7
1
pancreatic alpha cell
6
1
pancreatic acinar cell
5
1
pancreatic ductal cell
4
cardiac fibroblast
3
+ See 22 more…
in vitro differentiated cells
adipocyte
1
2
cell line
Panc1
1
glomerular visceral epithelial cell
1
See all biosamples
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