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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ATAC-seq
52
single cell RNA-seq
41
WGBS
21
snATAC-seq
5
FAIRE-seq
3
DNase-seq
Assay category
DNA binding
95
DNA accessibility
52
Transcription
41
DNA methylation
Date released
134
May, 2022
19
September, 2020
14
September, 2018
8
August, 2017
5
October, 2019
5
September, 2017
2
July, 2019
1
November, 2018
Available data
1814
bam
1779
bigWig
1600
tsv
501
fastq
492
bed narrowPeak
241
bigBed narrowPeak
220
bed bed3+
bed broadPeak
206
bigBed broadPeak
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
3
cool
2
ibed
1
bedpe
1
tar
1
vcf
Organism
188
Homo sapiens
Biosample type
177
primary cell
8
tissue
2
in vitro differentiated cells
1
cell line
Organ
105
pancreas
104
epithelium
4
connective tissue
2
adipose tissue
2
kidney
1
blood vessel
1
brain
1
liver
1
vasculature
1
vein
Project
153
HPAP
35
AMP
Genome assembly (visualization)
35
hg19
26
GRCh38
Lab
153
Klaus Kaestner, Upenn
35
AMP-T2D consortium
assay_slims!
DNA binding
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
188 results
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Clear Filters
ATAC-seq
single cell RNA-seq
WGBS
snATAC-seq
FAIRE-seq
DNase-seq
primary cell
Langerhans cell
52
21
pancreatic alpha cell
28
25
pancreatic beta cell
20
16
pancreatic acinar cell
9
pancreatic ductal cell
4
+ See 2 more…
tissue
islet of Langerhans
1
1
adipose tissue
1
frontal cortex
1
kidney
1
pancreas
1
+ See 2 more…
in vitro differentiated cells
adipocyte
2
cell line
glomerular visceral epithelial cell
1
See all biosamples
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