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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
total RNA-seq
70
single cell RNA-seq
31
ATAC-seq
17
DNase-seq
2
Hi-C
1
FAIRE-seq
Assay category
146
Transcription
DNA binding
49
DNA accessibility
2
3D chromatin structure
Date released
40
September, 2018
33
April, 2018
33
July, 2018
26
February, 2021
14
June, 2019
7
August, 2020
7
July, 2019
7
October, 2019
6
May, 2021
5
December, 2019
5
September, 2017
4
March, 2020
3
August, 2017
3
August, 2018
September, 2020
2
October, 2018
1
June, 2018
1
November, 2019
Available data
197
bigWig
188
bam
166
fastq
156
tsv
80
zippedFastqFolder
54
bed narrowPeak
40
bigBed narrowPeak
18
bed bed3+
16
bed broadPeak
16
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
197
Homo sapiens
Biosample type
158
primary cell
37
cell line
2
in vitro differentiated cells
Organ
495
connective tissue
459
pancreas
406
adipose tissue
197
epithelium
190
liver
110
heart
92
kidney
76
vasculature
74
blood vessel
60
artery
58
bone element
50
brain
43
limb
41
musculature of body
18
ureter
15
embryo
7
nerve
4
eye
4
spleen
3
vein
1
blood
1
bodily fluid
1
pericardium
Project
188
AMP
7
HPAP
2
T1D
Genome assembly (visualization)
192
GRCh38
184
hg19
Lab
190
AMP-T2D consortium
7
Klaus Kaestner, Upenn
Audit category:
38
inconsistent ontology term
assay_slims!
DNA binding
lab.title!
Bing Ren, UCSD
month_released!
September, 2020
BIOSAMPLE
ASSAY
197 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
Hi-C
FAIRE-seq
primary cell
pancreatic alpha cell
10
12
11
pancreatic beta cell
10
12
9
pancreatic acinar cell
4
12
5
pancreatic ductal cell
4
10
4
pancreatic delta cell
11
+ See 18 more…
cell line
EndoC_BH1
33
2
glomerular visceral epithelial cell
1
1
in vitro differentiated cells
endothelial cell
1
intermediate endothelial cell
1
See all biosamples
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