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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
265
total RNA-seq
14
single cell RNA-seq
2
small RNA-seq
1
ATAC-seq
1
pCHi-C
Assay category
281
Transcription
1
DNA accessibility
Date released
122
July, 2018
89
August, 2017
36
May, 2021
19
November, 2019
8
April, 2018
4
July, 2019
3
March, 2020
1
August, 2021
1
February, 2020
Available data
341
bam
301
bigWig
283
tsv
143
fastq
51
bed narrowPeak
10
bigBed narrowPeak
9
bed broadPeak
8
bed bed3+
7
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
bedpe bed3+
3
hic
1
bedpe
1
hdf5
Organism
283
Homo sapiens
Biosample type
275
tissue
8
primary cell
Organ
478
connective tissue
417
pancreas
401
adipose tissue
174
liver
168
heart
epithelium
68
blood vessel
68
vasculature
58
artery
58
bone element
26
brain
24
kidney
14
embryo
9
musculature of body
7
limb
5
eye
5
nerve
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
283
AMP
Genome assembly (visualization)
280
hg19
279
GRCh38
Lab
282
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
4
inconsistent ontology term
assay_slims!
DNA binding
month_released!
April, 2019
organ_slims!
epithelium
BIOSAMPLE
ASSAY
283 results
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total RNA-seq
single cell RNA-seq
small RNA-seq
ATAC-seq
pCHi-C
tissue
islet of Langerhans
261
6
1
body of pancreas
3
2
pancreas
1
1
primary cell
pancreatic stellate cell
4
co-expressing pancreatic endocrine cell
2
unclassified pancreatic endocrine cell
2
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