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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1420total RNA-seq
  • 530ATAC-seq
  • 267single cell RNA-seq
  • 209DNase-seq
  • 87RNA microarray
  • 84snATAC-seq
  • 69WGBS
  • 57pCHi-C
  • 34Hi-C
  • 18small RNA-seq
  • 17RRBS
  • 10MeRIP-seq
  • 5STARR-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3FAIRE-seq
  • 3snDrop-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 1709Transcription
  • DNA binding
  • 826DNA accessibility
  • 87DNA methylation
  • 343D chromatin structure
  • 1DNA sequencing
Target of assay
  • 8control
  • 5nucleotide modification
Date released
  • 707February, 2021
  • 291May, 2020
  • 276August, 2021
  • 234May, 2021
  • 200May, 2022
  • 187June, 2019
  • 129February, 2023
  • 126July, 2018
  • 108July, 2019
  • 104August, 2017
  • 72October, 2019
  • 61March, 2020
  • 48November, 2019
  • 47September, 2023
  • 41September, 2018
  • 25February, 2020
  • 24September, 2020
  • 19April, 2020
  • 16January, 2021
  • 16November, 2020
  • 15May, 2023
  • 14November, 2018
  • 12April, 2018
  • 10December, 2019
  • 7August, 2020
  • 7October, 2017
  • 5January, 2019
  • 5March, 2019
  • 5March, 2023
  • 5September, 2017
  • 4October, 2022
  • 3January, 2018
  • 2August, 2018
  • 2October, 2018
  • 1August, 2022
  • 1December, 2018
  • 1June, 2018
Available data
  • 1706bam
  • 1666bigWig
  • 1502tsv
  • 487bed narrowPeak
  • 289fastq
  • 236bigBed narrowPeak
  • 219bed bed3+
  • 206bed broadPeak
  • 204bigBed broadPeak
  • 161txt
  • 134zippedFastqFolder
  • 64xls
  • 28bed bedMethyl
  • 28bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tar
  • 1vcf
Organism
  • 2822Homo sapiens
Biosample type
  • 1850tissue
  • 619primary cell
  • 178cell line
  • 177in vitro differentiated cells
  • 6stem cell
Organ
  • 605pancreas
  • 525connective tissue
  • 415adipose tissue
  • 302kidney
  • 286epithelium
  • 259heart
  • 237liver
  • 159bone element
  • 134vasculature
  • 131blood vessel
  • 107artery
  • 66brain
  • 56eye
  • 56limb
  • 55musculature of body
  • 20lung
  • 18ureter
  • 16skeleton
  • 10embryo
  • 9blood
  • 9bodily fluid
  • 8nerve
  • 5spleen
  • 5vein
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1mammary gland
  • 1ovary
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 2390AMP
  • 213HPAP
  • 156T1D
  • 47KPMP
  • 19LungMap
  • 4community
  • 1ITG
Genome assembly (visualization)
  • 1801hg19
  • 1756GRCh38
Lab
  • 2134AMP-T2D consortium
  • 213Klaus Kaestner, Upenn
  • 189Kyle Gaulton, UCSD
  • 142Katalin Susztak, Upenn
  • 47KPMP
  • 40Karen Mohlke, UNC
  • 20Bing Ren, UCSD
  • 19Xin Sun, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 7Struan F.A. Grant, CHOP
  • 4Anna Gloyn, Oxford
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 287inconsistent ontology term
  • 42audit script error
  • 1inconsistent replicate
Audit category:
  • 1inconsistent assembly
assay_slims!
  • DNA binding
files.run_type!
  • single-ended
BIOSAMPLE
ASSAY

2830 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
MeRIP-seq
STARR-seq
Capture-C
CRISPR genome editing followed by DNA sequencing
FAIRE-seq
snDrop-seq
HiChIP
CRISPR RNA-seq
CRISPR genome editing followed by sgRNA sequencing
...and 6 more
tissue
adipose tissue38231
islet of Langerhans2926874314
kidney497564136111
liver16720122111
bone element84
primary cell
Langerhans cell6648
pancreatic alpha cell10352311
monocyte54151
pancreatic beta cell10232161
naive thymus-derived CD4-positive, alpha-beta T cell1221
cell line
EndoC_BH13319162321
smooth muscle cell of the coronary artery528
HepG21411222
H1-hESC8
EndoC-BH1
in vitro differentiated cells
cardiomyocytes59
cardiac precursors (cardiac muscle cell)1911
neural progenitor cell710
adipocyte5811
embryonic stem cell561
stem cell
SB Ad3.11
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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