Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 130total RNA-seq
  • 99ATAC-seq
  • 85single cell RNA-seq
  • 48snATAC-seq
  • 10DNase-seq
  • 5WGBS
  • 1Hi-C
  • 1pCHi-C
Assay category
  • 215Transcription
  • DNA binding
  • 157DNA accessibility
  • 5DNA methylation
  • 13D chromatin structure
Date released
  • 117May, 2022
  • 96August, 2017
  • 41September, 2018
  • 39February, 2021
  • 25September, 2020
  • 14November, 2018
  • 9July, 2018
  • 7April, 2018
  • 7August, 2020
  • 7October, 2017
  • 5January, 2019
  • 5September, 2017
  • 2August, 2018
  • 2October, 2018
  • 1December, 2018
  • 1June, 2018
  • 1March, 2019
Available data
  • 286fastq
  • 210bam
  • 196bigWig
  • 140tsv
  • 94zippedFastqFolder
  • 58bed narrowPeak
  • 34bigBed narrowPeak
  • 12bed broadPeak
  • 10bigBed broadPeak
  • 8bed bed3+
  • 6txt
  • 5bed bedMethyl
  • 5bigBed bedMethyl
  • 2csv
  • 1bedpe bed3+
Organism
  • 379Homo sapiens
Biosample type
  • 233primary cell
  • 137tissue
  • 7cell line
  • 2in vitro differentiated cells
Organ
  • 235pancreas
  • 110epithelium
  • 11liver
  • 5connective tissue
  • 4adipose tissue
  • 4spleen
  • 1brain
Project
  • 215AMP
  • 164HPAP
Genome assembly (visualization)
  • 199hg19
  • 195GRCh38
Lab
  • 189AMP-T2D consortium
  • 164Klaus Kaestner, Upenn
  • 24Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 27audit script error
assay_slims!
  • DNA binding
BIOSAMPLE
ASSAY

379 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
primary cell
Langerhans cell6748
pancreatic alpha cell10353
pancreatic beta cell10232
pancreatic acinar cell492
pancreatic ductal cell442
tissue
islet of Langerhans9720
body of pancreas422
spleen112
liver2
omental fat pad11
cell line
HepG2511
in vitro differentiated cells
adipocyte1
white fat cell1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2026 Regents of the University of California.

  • UC San Diego