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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 107total RNA-seq
  • 102single cell RNA-seq
  • 6WGBS
  • 5GRO-seq
  • 4RRBS
  • 3DNase-seq
  • 2FAIRE-seq
  • 1ATAC-seq
Assay category
  • DNA binding
  • 209Transcription
  • 10DNA methylation
  • 6DNA accessibility
Date released
  • 76February, 2023
  • 42July, 2018
  • 37April, 2018
  • 35September, 2020
  • 15February, 2018
  • 11August, 2017
  • 5January, 2018
  • 4November, 2018
  • 2August, 2018
  • 2June, 2018
  • 1October, 2017
Available data
  • 212fastq
  • 113bigWig
  • 108bam
  • 98tsv
  • 19zippedFastqFolder
  • 8bed bedMethyl
  • 8bigBed bedMethyl
  • 5bed narrowPeak
  • 5bigBed narrowPeak
  • 2bed broadPeak
  • 2bigBed broadPeak
  • 1bed bed3+
Organism
  • 230Homo sapiens
Biosample type
  • 190primary cell
  • 20tissue
  • 19in vitro differentiated cells
  • 1stem cell
Organ
  • 123pancreas
  • 109epithelium
  • 6connective tissue
  • 5embryo
  • 3adipose tissue
  • 2brain
  • 2liver
  • 2musculature of body
Project
  • 119AMP
  • 111HPAP
Genome assembly (visualization)
  • 107hg19
  • 105GRCh38
  • 5hg18
Lab
  • 119AMP-T2D consortium
  • 111Klaus Kaestner, Upenn
Audit category:
  • 7inconsistent ontology term
assay_slims!
  • DNA binding
BIOSAMPLE
ASSAY

230 results

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Clear Filters
total RNA-seq
single cell RNA-seq
WGBS
GRO-seq
RRBS
DNase-seq
FAIRE-seq
ATAC-seq
primary cell
pancreatic alpha cell4210
exocrine cell39
pancreatic beta cell1110
Langerhans cell19
pancreatic delta cell9
tissue
islet of Langerhans611
adipose tissue3
pancreas21
liver11
skeletal muscle tissue2
in vitro differentiated cells
pancreatic endoderm41
definitive endodermal cell21
primitive gut cell21
embryonic stem cell2
endocrine cell2
stem cell
hESC1
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