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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
107
total RNA-seq
102
single cell RNA-seq
6
WGBS
5
GRO-seq
4
RRBS
3
DNase-seq
2
FAIRE-seq
1
ATAC-seq
Assay category
DNA binding
209
Transcription
10
DNA methylation
6
DNA accessibility
Date released
76
February, 2023
42
July, 2018
37
April, 2018
35
September, 2020
15
February, 2018
11
August, 2017
5
January, 2018
4
November, 2018
2
August, 2018
2
June, 2018
1
October, 2017
Available data
212
fastq
113
bigWig
108
bam
98
tsv
19
zippedFastqFolder
8
bed bedMethyl
8
bigBed bedMethyl
5
bed narrowPeak
5
bigBed narrowPeak
2
bed broadPeak
2
bigBed broadPeak
1
bed bed3+
Organism
230
Homo sapiens
Biosample type
190
primary cell
20
tissue
19
in vitro differentiated cells
1
stem cell
Organ
123
pancreas
109
epithelium
6
connective tissue
5
embryo
3
adipose tissue
2
brain
2
liver
2
musculature of body
Project
119
AMP
111
HPAP
Genome assembly (visualization)
107
hg19
105
GRCh38
5
hg18
Lab
119
AMP-T2D consortium
111
Klaus Kaestner, Upenn
Audit category:
7
inconsistent ontology term
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
230 results
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total RNA-seq
single cell RNA-seq
WGBS
GRO-seq
RRBS
DNase-seq
FAIRE-seq
ATAC-seq
primary cell
pancreatic alpha cell
42
10
exocrine cell
39
pancreatic beta cell
11
10
Langerhans cell
19
pancreatic delta cell
9
+ See 14 more…
tissue
islet of Langerhans
6
1
1
adipose tissue
3
pancreas
2
1
liver
1
1
skeletal muscle tissue
2
+ See 2 more…
in vitro differentiated cells
pancreatic endoderm
4
1
definitive endodermal cell
2
1
primitive gut cell
2
1
embryonic stem cell
2
endocrine cell
2
+ See 3 more…
stem cell
hESC
1
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