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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
5
ATAC-seq
3
pCHi-C
3
small RNA-seq
2
DNase-seq
1
RNA microarray
Assay category
401
Transcription
DNA binding
7
DNA accessibility
Date released
386
February, 2021
12
July, 2019
August, 2017
2
February, 2020
2
March, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
403
bigWig
402
bam
402
tsv
5
bed narrowPeak
3
bigBed narrowPeak
3
fastq
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
1
bedpe bed3+
Organism
411
Homo sapiens
Biosample type
409
tissue
2
primary cell
1
in vitro differentiated cells
Organ
632
pancreas
523
connective tissue
411
adipose tissue
392
epithelium
302
kidney
259
heart
233
liver
159
bone element
134
vasculature
131
blood vessel
107
artery
68
brain
56
eye
56
limb
53
musculature of body
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
412
AMP
Genome assembly (visualization)
406
hg19
403
GRCh38
Lab
412
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_slims!
DNA binding
lab.title!
Mark McCarthy, Oxford
month_released!
August, 2017
BIOSAMPLE
ASSAY
412 results
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total RNA-seq
ATAC-seq
pCHi-C
small RNA-seq
DNase-seq
RNA microarray
tissue
adipose tissue
382
3
1
omental fat pad
5
1
1
2
subcutaneous adipose tissue
7
1
1
visceral abdominal adipose tissue
3
adipose tissue(adipose white tissue)
1
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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