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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
115
total RNA-seq
34
ATAC-seq
17
pCHi-C
10
snATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
DNA binding
115
Transcription
44
DNA accessibility
Date released
81
May, 2021
45
May, 2020
24
May, 2022
23
February, 2023
8
January, 2021
Available data
120
bam
103
bigWig
96
tsv
24
fastq
18
bed narrowPeak
6
txt
2
bed bed3+
Organism
181
Homo sapiens
Biosample type
114
primary cell
52
tissue
10
in vitro differentiated cells
5
cell line
Organ
51
pancreas
8
blood
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
144
T1D
37
AMP
Genome assembly (visualization)
121
hg19
96
GRCh38
Lab
2229
AMP-T2D consortium
324
Klaus Kaestner, Upenn
181
Kyle Gaulton, UCSD
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
20
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
Audit category:
5
inconsistent ontology term
assay_slims!
DNA binding
month_released!
October, 2017
organ_slims!
bodily fluid
skeleton
BIOSAMPLE
ASSAY
181 results
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total RNA-seq
ATAC-seq
pCHi-C
snATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
53
1
CD8-positive, alpha-beta T cell
4
1
B cell
2
1
naive B cel
2
1
naive thymus-derived CD8-positive, alpha-beta T cell
2
1
+ See 30 more…
tissue
islet of Langerhans
11
29
6
pancreas
1
4
thymus
1
in vitro differentiated cells
embryonic stem cell
5
5
cell line
EndoC_BH1
3
2
See all biosamples
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