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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ATAC-seq
20
total RNA-seq
6
DNase-seq
4
pCHi-C
2
Hi-C
2
RRBS
1
FAIRE-seq
Assay category
35
DNA accessibility
DNA binding
20
Transcription
2
3D chromatin structure
2
DNA methylation
Date released
31
February, 2023
23
October, 2019
4
June, 2019
3
July, 2019
1
February, 2020
1
March, 2020
Available data
34
bed narrowPeak
8
bam
8
bigWig
7
bigBed narrowPeak
6
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
6
tsv
2
bed bedMethyl
2
bigBed bedMethyl
2
hic
1
bedpe bed3+
1
tar
Organism
63
Homo sapiens
Biosample type
55
tissue
8
primary cell
Organ
721
pancreas
531
connective tissue
418
adipose tissue
388
epithelium
302
kidney
259
heart
239
liver
159
bone element
134
vasculature
131
blood vessel
107
artery
68
brain
57
musculature of body
56
eye
56
limb
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
63
AMP
Genome assembly (visualization)
39
hg19
7
GRCh38
Lab
63
AMP-T2D consortium
Audit category:
1
audit script error
assay_slims!
DNA binding
month_released!
August, 2020
BIOSAMPLE
ASSAY
63 results
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ATAC-seq
total RNA-seq
DNase-seq
pCHi-C
Hi-C
RRBS
FAIRE-seq
tissue
retina
15
3
3
islet of Langerhans
1
14
4
pigmented layer of retina
12
2
pericardium
1
primary cell
endothelial cell of umbilical vein
2
2
1
retinal pigment epithelial cell
1
1
pericardium fibroblast
1
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