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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1453total RNA-seq
  • 455ATAC-seq
  • 263single cell RNA-seq
  • 212DNase-seq
  • 86RNA microarray
  • 78snATAC-seq
  • 75WGBS
  • 57pCHi-C
  • 31Hi-C
  • 21RRBS
  • 18small RNA-seq
  • 10MeRIP-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 3snDrop-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
Assay category
  • DNA binding
  • 1738Transcription
  • 750DNA accessibility
  • 97DNA methylation
  • 313D chromatin structure
Target of assay
  • 8control
  • 5nucleotide modification
Date released
  • 707February, 2021
  • 291May, 2020
  • August, 2021
  • 234May, 2021
  • 205February, 2023
  • 200May, 2022
  • 187June, 2019
  • 168July, 2018
  • 115August, 2017
  • 108July, 2019
  • 72October, 2019
  • 61March, 2020
  • 59September, 2020
  • 49April, 2018
  • 48November, 2019
  • 47September, 2023
  • 41September, 2018
  • 25February, 2020
  • 19April, 2020
  • 18November, 2018
  • 16January, 2021
  • 16November, 2020
  • 15February, 2018
  • 15May, 2023
  • 10December, 2019
  • 8January, 2018
  • 8October, 2017
  • 7August, 2020
  • 5January, 2019
  • 5March, 2019
  • 5March, 2023
  • 5September, 2017
  • 4August, 2018
  • 4October, 2022
  • 3June, 2018
  • 2October, 2018
  • 1August, 2022
  • 1December, 2018
Available data
  • 1789bam
  • 1762bigWig
  • 1477tsv
  • 501fastq
  • 416bed narrowPeak
  • 241bigBed narrowPeak
  • 218bed bed3+
  • 208bed broadPeak
  • 206bigBed broadPeak
  • 153zippedFastqFolder
  • 104txt
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 21bedpe bed3+
  • 21hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tar
Organism
  • 2777Homo sapiens
Biosample type
  • 1641tissue
  • 809primary cell
  • 175in vitro differentiated cells
  • 152cell line
  • 7stem cell
Organ
  • 724pancreas
  • 526connective tissue
  • 417adipose tissue
  • 393epithelium
  • 226liver
  • 172kidney
  • 167heart
  • 159bone element
  • 128vasculature
  • 125blood vessel
  • 105artery
  • 68brain
  • 57musculature of body
  • 56eye
  • 56limb
  • 20lung
  • 18ureter
  • 16skeleton
  • 9blood
  • 9bodily fluid
  • 8nerve
  • 7embryo
  • 5spleen
  • 5vein
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1mammary gland
  • 1ovary
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 2233AMP
  • 324HPAP
  • 156T1D
  • 47KPMP
  • 19LungMap
  • 4community
  • 1ITG
Genome assembly (visualization)
  • 1877hg19
  • 1772GRCh38
  • 5hg18
Lab
  • 2127AMP-T2D consortium
  • 324Klaus Kaestner, Upenn
  • 189Kyle Gaulton, UCSD
  • 47KPMP
  • 40Karen Mohlke, UNC
  • 19Xin Sun, UCSD
  • 14Katalin Susztak, Upenn
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 4Anna Gloyn, Oxford
  • 3Struan F.A. Grant, CHOP
  • 2Bing Ren, UCSD
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 291inconsistent ontology term
  • 42audit script error
  • 1inconsistent replicate
Audit category:
  • 1inconsistent assembly
assay_slims!
  • DNA binding
month_released!
  • August, 2021
BIOSAMPLE
ASSAY

2784 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
MeRIP-seq
FAIRE-seq
GRO-seq
CRISPR genome editing followed by DNA sequencing
snDrop-seq
HiChIP
CRISPR RNA-seq
CRISPR genome editing followed by sgRNA sequencing
CRISPRi RNA-seq
...and 4 more
tissue
adipose tissue382331
islet of Langerhans2916861742141
liver167201231111
bone element84
kidney11561311
primary cell
Langerhans cell8548
pancreatic alpha cell523512311
pancreatic beta cell212312161
monocyte54151
exocrine cell39
in vitro differentiated cells
cardiomyocytes59
cardiac precursors (cardiac muscle cell)1911
embryonic stem cell761
adipocyte571
cardiomyocytes (cardiac muscle cell)31222
cell line
EndoC_BH1331916321
smooth muscle cell of the coronary artery528
HepG251121
EndoC-BH1
Panc111
stem cell
SB Ad3.111
hESC1
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
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