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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 982total RNA-seq
  • 509ATAC-seq
  • 351single cell RNA-seq
  • 212DNase-seq
  • 69WGBS
  • 57snATAC-seq
  • 55pCHi-C
  • 34Hi-C
  • 21RRBS
  • 18small RNA-seq
  • 10MeRIP-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3RNA microarray
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • DNA binding
  • 1355Transcription
  • 783DNA accessibility
  • 91DNA methylation
  • 343D chromatin structure
  • 1DNA sequencing
Target of assay
  • 8control
  • 5nucleotide modification
Date released
  • February, 2021
  • 291May, 2020
  • 276August, 2021
  • 234May, 2021
  • 205February, 2023
  • 200May, 2022
  • 187June, 2019
  • 168July, 2018
  • 115August, 2017
  • 108July, 2019
  • 72October, 2019
  • 61March, 2020
  • 59September, 2020
  • 49April, 2018
  • 48November, 2019
  • 47September, 2023
  • 41September, 2018
  • 25February, 2020
  • 19April, 2020
  • 18November, 2018
  • 16January, 2021
  • 16November, 2020
  • 15February, 2018
  • 15May, 2023
  • 10December, 2019
  • 8January, 2018
  • 8October, 2017
  • 7August, 2020
  • 5January, 2019
  • 5March, 2019
  • 5March, 2023
  • 5September, 2017
  • 4August, 2018
  • 4October, 2022
  • 3June, 2018
  • 2October, 2018
  • 1August, 2022
  • 1December, 2018
Available data
  • 1250bam
  • 1233bigWig
  • 1041tsv
  • 474bed narrowPeak
  • 456fastq
  • 241bigBed narrowPeak
  • 218bed bed3+
  • 208bed broadPeak
  • 206bigBed broadPeak
  • 153zippedFastqFolder
  • 72txt
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 10bed bed3
  • 5hdf5
  • 3bed bedgraph
  • 3cool
  • 2csv
  • 2ibed
  • 1bedpe
  • 1tar
  • 1vcf
Organism
  • 2345Homo sapiens
Biosample type
  • 1325tissue
  • 761primary cell
  • 170in vitro differentiated cells
  • 90cell line
  • 7stem cell
Organ
  • 696pancreas
  • 363epithelium
  • 294kidney
  • 236liver
  • 199heart
  • 76connective tissue
  • 74vasculature
  • 71blood vessel
  • 68brain
  • 57musculature of body
  • 56eye
  • 50limb
  • 47artery
  • 32adipose tissue
  • 20lung
  • 18ureter
  • 15embryo
  • 9blood
  • 9bodily fluid
  • 9bone element
  • 8nerve
  • 8skeleton
  • 5spleen
  • 5vein
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1mammary gland
  • 1ovary
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 1847AMP
  • 279HPAP
  • 156T1D
  • 47KPMP
  • 19LungMap
  • 4community
  • 1ITG
Genome assembly (visualization)
  • 1339hg19
  • 1298GRCh38
  • 5hg18
Lab
  • 1591AMP-T2D consortium
  • 279Klaus Kaestner, Upenn
  • 189Kyle Gaulton, UCSD
  • 142Katalin Susztak, Upenn
  • 47KPMP
  • 40Karen Mohlke, UNC
  • 20Bing Ren, UCSD
  • 19Xin Sun, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 7Struan F.A. Grant, CHOP
  • 4Anna Gloyn, Oxford
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 166inconsistent ontology term
  • 10audit script error
Audit category:
  • 1inconsistent assembly
assay_slims!
  • DNA binding
month_released!
  • February, 2021
BIOSAMPLE
ASSAY

2353 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
WGBS
snATAC-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
MeRIP-seq
FAIRE-seq
GRO-seq
STARR-seq
Capture-C
CRISPR genome editing followed by DNA sequencing
RNA microarray
HiChIP
CRISPR RNA-seq
CRISPR genome editing followed by sgRNA sequencing
...and 6 more
tissue
islet of Langerhans2926861743141
kidney497559136111
liver16720231111
coronary artery1362
heart left ventricle321834111
primary cell
pancreatic alpha cell523512251
Langerhans cell7321
pancreatic beta cell212312161
monocyte54151
exocrine cell39
in vitro differentiated cells
cardiomyocytes59
neural progenitor cell710
embryonic stem cell761
cardiomyocytes (cardiac muscle cell)31222
induced pluripotent stem cell9
cell line
EndoC_BH1719162321
HepG2141122
H1-hESC8
EndoC-BH1
HEK293T2
stem cell
SB Ad3.11
hESC1
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
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