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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1434total RNA-seq
  • 428ATAC-seq
  • 368single cell RNA-seq
  • 212DNase-seq
  • 87RNA microarray
  • 82snATAC-seq
  • 75WGBS
  • 57pCHi-C
  • 34Hi-C
  • 21RRBS
  • 18small RNA-seq
  • 10MeRIP-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 3snDrop-seq
  • 1CRISPR RNA-seq
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • DNA binding
  • 1824Transcription
  • 727DNA accessibility
  • 97DNA methylation
  • 343D chromatin structure
  • 1DNA sequencing
Target of assay
  • 8control
  • 5nucleotide modification
Date released
  • 707February, 2021
  • 291May, 2020
  • 276August, 2021
  • 234May, 2021
  • February, 2023
  • 200May, 2022
  • 187June, 2019
  • 168July, 2018
  • 115August, 2017
  • 108July, 2019
  • 72October, 2019
  • 61March, 2020
  • 59September, 2020
  • 49April, 2018
  • 48November, 2019
  • 47September, 2023
  • 41September, 2018
  • 25February, 2020
  • 19April, 2020
  • 18November, 2018
  • 16January, 2021
  • 16November, 2020
  • 15February, 2018
  • 15May, 2023
  • 10December, 2019
  • 8January, 2018
  • 8October, 2017
  • 7August, 2020
  • 5January, 2019
  • 5March, 2019
  • 5March, 2023
  • 5September, 2017
  • 4August, 2018
  • 4October, 2022
  • 3June, 2018
  • 2October, 2018
  • 1August, 2022
  • 1December, 2018
Available data
  • 1814bam
  • 1776bigWig
  • 1584tsv
  • 427bed narrowPeak
  • 425fastq
  • 241bigBed narrowPeak
  • 216bed bed3+
  • 208bed broadPeak
  • 206bigBed broadPeak
  • 154txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 8csv
  • 5hdf5
  • 4bed bedgraph
  • 3cool
  • 2bed bed3
  • 2ibed
  • 1bedpe
  • 1tar
  • 1vcf
Organism
  • 2848Homo sapiens
Biosample type
  • 1775tissue
  • 721primary cell
  • 180in vitro differentiated cells
  • 172cell line
  • 7stem cell
Organ
  • 672pancreas
  • 517connective tissue
  • 417adipose tissue
  • 343epithelium
  • 302kidney
  • 239liver
  • 223heart
  • 151bone element
  • 99vasculature
  • 96blood vessel
  • 72artery
  • 67brain
  • 57musculature of body
  • 56limb
  • 25eye
  • 20lung
  • 18ureter
  • 15embryo
  • 9blood
  • 9bodily fluid
  • 8nerve
  • 8skeleton
  • 5spleen
  • 5vein
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1mammary gland
  • 1ovary
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 2403AMP
  • 248HPAP
  • 133T1D
  • 47KPMP
  • 19LungMap
  • 4community
  • 1ITG
Genome assembly (visualization)
  • 1863hg19
  • 1826GRCh38
  • 5hg18
Lab
  • 2150AMP-T2D consortium
  • 248Klaus Kaestner, Upenn
  • 166Kyle Gaulton, UCSD
  • 142Katalin Susztak, Upenn
  • 47KPMP
  • 40Karen Mohlke, UNC
  • 20Bing Ren, UCSD
  • 19Xin Sun, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 4Anna Gloyn, Oxford
  • 4Struan F.A. Grant, CHOP
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 283inconsistent ontology term
  • 42audit script error
  • 1inconsistent replicate
Audit category:
  • 1inconsistent assembly
assay_slims!
  • DNA binding
month_released!
  • February, 2023
BIOSAMPLE
ASSAY

2855 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
MeRIP-seq
FAIRE-seq
GRO-seq
STARR-seq
Capture-C
snDrop-seq
CRISPR RNA-seq
CRISPRi RNA-seq
DNAme array
...and 4 more
tissue
adipose tissue382231
islet of Langerhans2875761543141
kidney497564136111
liver167201231111
bone element84
primary cell
Langerhans cell8548
pancreatic alpha cell253512311
monocyte541511
pancreatic beta cell112312161
pancreatic acinar cell49121
in vitro differentiated cells
cardiomyocytes59
cardiac precursors (cardiac muscle cell)1911
neural progenitor cell710
adipocyte4711
embryonic stem cell751
cell line
EndoC_BH13319162
smooth muscle cell of the coronary artery528
HepG21411222
H1-hESC8
EndoC-BH1
stem cell
SB Ad3.111
hESC1
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
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