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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
397
total RNA-seq
6
ATAC-seq
6
WGBS
3
small RNA-seq
2
DNase-seq
1
RNA microarray
1
pCHi-C
Assay category
400
Transcription
DNA binding
8
DNA accessibility
6
DNA methylation
Date released
386
February, 2021
12
July, 2019
7
August, 2017
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
March, 2020
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
406
bigWig
405
bam
400
tsv
7
fastq
6
bed narrowPeak
4
bigBed narrowPeak
2
bed bed3+
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
415
Homo sapiens
Biosample type
413
tissue
2
primary cell
1
in vitro differentiated cells
Organ
717
pancreas
528
connective tissue
416
adipose tissue
390
epithelium
286
kidney
252
heart
236
liver
159
bone element
130
vasculature
127
blood vessel
107
artery
66
brain
eye
56
limb
52
musculature of body
19
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
4
spleen
4
vein
2
pericardium
1
bone marrow
1
pituitary gland
1
skin of body
1
spinal cord
1
thymus
Project
416
AMP
Genome assembly (visualization)
406
hg19
405
GRCh38
Lab
416
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_slims!
DNA binding
month_released!
March, 2020
May, 2023
organ_slims!
eye
BIOSAMPLE
ASSAY
416 results
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total RNA-seq
ATAC-seq
WGBS
small RNA-seq
DNase-seq
RNA microarray
pCHi-C
tissue
adipose tissue
381
3
3
subcutaneous adipose tissue
7
1
1
1
omental fat pad
5
1
1
2
subcutaneous abdominal adipose tissue
3
visceral abdominal adipose tissue
3
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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