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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
DNase-seq
8
ATAC-seq
8
total RNA-seq
4
Hi-C
1
RRBS
1
WGBS
Assay category
DNA binding
44
DNA accessibility
8
Transcription
4
3D chromatin structure
2
DNA methylation
Date released
32
June, 2019
10
October, 2019
7
July, 2019
6
February, 2021
3
February, 2020
Available data
50
bam
44
bed narrowPeak
44
bigWig
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
36
bigBed narrowPeak
8
tsv
2
bed bedMethyl
2
bigBed bedMethyl
Organism
58
Homo sapiens
Biosample type
57
tissue
1
primary cell
Organ
717
pancreas
529
connective tissue
adipose tissue
390
epithelium
300
kidney
252
heart
236
liver
159
bone element
130
vasculature
127
blood vessel
107
artery
66
brain
56
eye
56
limb
52
musculature of body
19
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
4
spleen
4
vein
2
pericardium
1
bone marrow
1
pituitary gland
1
skin of body
1
spinal cord
1
thymus
Project
58
AMP
Genome assembly (visualization)
50
GRCh38
50
hg19
Lab
58
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_slims!
DNA binding
month_released!
March, 2020
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
58 results
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DNase-seq
ATAC-seq
total RNA-seq
Hi-C
RRBS
WGBS
tissue
muscle of arm
17
muscle of leg
13
1
tibial nerve
2
1
5
gastrocnemius medialis
1
4
tibial artery
2
1
1
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primary cell
pericardium fibroblast
1
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