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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
405
total RNA-seq
38
DNase-seq
14
ATAC-seq
7
WGBS
4
Hi-C
3
small RNA-seq
2
pCHi-C
1
RNA microarray
Assay category
408
Transcription
DNA binding
52
DNA accessibility
7
DNA methylation
4
3D chromatin structure
Date released
392
February, 2021
33
June, 2019
17
July, 2019
11
October, 2019
7
August, 2017
5
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
454
bam
449
bigWig
408
tsv
50
bed narrowPeak
40
bigBed narrowPeak
38
bed bed3+
38
bed broadPeak
38
bigBed broadPeak
7
fastq
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
Organism
473
Homo sapiens
Biosample type
471
tissue
2
primary cell
1
in vitro differentiated cells
Organ
671
pancreas
529
connective tissue
418
adipose tissue
373
epithelium
302
kidney
256
heart
239
liver
158
bone element
134
vasculature
131
blood vessel
107
artery
68
brain
57
musculature of body
56
eye
56
limb
20
lung
18
ureter
16
skeleton
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
474
AMP
Genome assembly (visualization)
455
GRCh38
455
hg19
Lab
474
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
assay_slims!
DNA binding
month_released!
May, 2021
organ_slims!
embryo
BIOSAMPLE
ASSAY
474 results
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total RNA-seq
DNase-seq
ATAC-seq
WGBS
Hi-C
small RNA-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
3
3
1
muscle of arm
17
muscle of leg
13
1
subcutaneous adipose tissue
7
1
1
1
omental fat pad
5
2
1
1
+ See 14 more…
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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