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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1345total RNA-seq
  • 497ATAC-seq
  • 369single cell RNA-seq
  • 212DNase-seq
  • 87RNA microarray
  • 84snATAC-seq
  • 75WGBS
  • 40pCHi-C
  • 34Hi-C
  • 21RRBS
  • 18small RNA-seq
  • 10MeRIP-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3snDrop-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 1736Transcription
  • DNA binding
  • 798DNA accessibility
  • 96DNA methylation
  • 343D chromatin structure
  • 1DNA sequencing
Target of assay
  • 8control
  • 5nucleotide modification
Date released
  • 707February, 2021
  • 291May, 2020
  • 276August, 2021
  • May, 2021
  • 205February, 2023
  • 200May, 2022
  • 187June, 2019
  • 168July, 2018
  • 115August, 2017
  • 108July, 2019
  • 72October, 2019
  • 61March, 2020
  • 59September, 2020
  • 49April, 2018
  • 48November, 2019
  • 47September, 2023
  • 41September, 2018
  • 25February, 2020
  • 19April, 2020
  • 18November, 2018
  • 16January, 2021
  • 16November, 2020
  • 15February, 2018
  • 15May, 2023
  • 10December, 2019
  • 8January, 2018
  • 8October, 2017
  • 7August, 2020
  • 5January, 2019
  • 5March, 2019
  • 5March, 2023
  • 5September, 2017
  • 4August, 2018
  • 4October, 2022
  • 3June, 2018
  • 2October, 2018
  • 1August, 2022
  • 1December, 2018
Available data
  • 1628bam
  • 1599bigWig
  • 1427tsv
  • 501fastq
  • 479bed narrowPeak
  • 241bigBed narrowPeak
  • 218bed bed3+
  • 208bed broadPeak
  • 206bigBed broadPeak
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tar
  • 1vcf
Organism
  • 2818Homo sapiens
Biosample type
  • 1830tissue
  • 724primary cell
  • 158cell line
  • 107in vitro differentiated cells
  • 7stem cell
Organ
  • 671pancreas
  • 529connective tissue
  • 418adipose tissue
  • 373epithelium
  • 302kidney
  • 256heart
  • 239liver
  • 158bone element
  • 134vasculature
  • 131blood vessel
  • 107artery
  • 68brain
  • 57musculature of body
  • 56eye
  • 56limb
  • 20lung
  • 18ureter
  • 16skeleton
  • 13embryo
  • 9blood
  • 9bodily fluid
  • 8nerve
  • 5spleen
  • 5vein
  • 2intestine
  • 2pericardium
  • 1adrenal gland
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1mammary gland
  • 1ovary
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 2343AMP
  • 324HPAP
  • 88T1D
  • 47KPMP
  • 19LungMap
  • 4community
  • 1ITG
Genome assembly (visualization)
  • 1715hg19
  • 1675GRCh38
  • 5hg18
Lab
  • 2100AMP-T2D consortium
  • 324Klaus Kaestner, Upenn
  • 142Katalin Susztak, Upenn
  • 108Kyle Gaulton, UCSD
  • 47KPMP
  • 40Karen Mohlke, UNC
  • 20Bing Ren, UCSD
  • 19Xin Sun, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 7Struan F.A. Grant, CHOP
  • 4Anna Gloyn, Oxford
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 208inconsistent ontology term
  • 42audit script error
  • 1inconsistent replicate
Audit category:
  • 1inconsistent assembly
assay_slims!
  • DNA binding
month_released!
  • May, 2021
BIOSAMPLE
ASSAY

2826 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
MeRIP-seq
FAIRE-seq
GRO-seq
STARR-seq
Capture-C
CRISPR genome editing followed by DNA sequencing
snDrop-seq
HiChIP
CRISPR RNA-seq
...and 6 more
tissue
adipose tissue382331
islet of Langerhans2566861743141
kidney497564136111
liver167201231111
bone element84
primary cell
Langerhans cell8548
pancreatic alpha cell523512311
pancreatic beta cell212312161
exocrine cell39
pancreatic acinar cell49121
cell line
smooth muscle cell of the coronary artery528
EndoC_BH129316232
HepG21411222
H1-hESC8
EndoC-BH1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)1911
neural progenitor cell710
adipocyte5811
cardiomyocytes (cardiac muscle cell)21222
Pancreatic progenitors (progenitor cell of endocrine pancreas)5
stem cell
SB Ad3.11
hESC1
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
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