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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
487
total RNA-seq
67
single cell RNA-seq
27
snATAC-seq
14
ATAC-seq
6
WGBS
3
snDrop-seq
2
pCHi-C
Assay category
554
Transcription
41
DNA accessibility
DNA binding
6
DNA methylation
Date released
557
February, 2021
291
May, 2020
276
August, 2021
233
May, 2021
200
May, 2022
197
February, 2023
187
June, 2019
168
July, 2018
115
August, 2017
108
July, 2019
72
October, 2019
61
March, 2020
59
September, 2020
49
April, 2018
48
November, 2019
47
September, 2023
41
September, 2018
25
February, 2020
19
April, 2020
18
November, 2018
16
January, 2021
16
November, 2020
15
February, 2018
15
May, 2023
10
December, 2019
8
January, 2018
8
October, 2017
7
August, 2020
5
January, 2019
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
1
August, 2022
1
December, 2018
Available data
550
tsv
547
bam
537
bigWig
89
fastq
10
bed narrowPeak
6
csv
5
txt
4
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
606
Homo sapiens
Biosample type
401
tissue
91
primary cell
88
cell line
26
in vitro differentiated cells
Organ
457
connective tissue
386
adipose tissue
bone element
71
pancreas
65
epithelium
60
artery
60
blood vessel
60
heart
60
vasculature
8
kidney
8
skeleton
6
limb
3
liver
Project
561
AMP
45
HPAP
Genome assembly (visualization)
552
hg19
546
GRCh38
Lab
561
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
44
inconsistent ontology term
32
audit script error
1
inconsistent replicate
assay_slims!
DNA binding
organ_slims!
bone element
BIOSAMPLE
ASSAY
606 results
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total RNA-seq
single cell RNA-seq
snATAC-seq
ATAC-seq
WGBS
snDrop-seq
pCHi-C
tissue
adipose tissue
381
islet of Langerhans
6
kidney
5
visceral abdominal adipose tissue
3
subcutaneous adipose tissue
2
+ See 4 more…
primary cell
Langerhans cell
12
27
pancreatic alpha cell
3
6
pancreatic delta cell
7
pancreatic acinar cell
6
pancreatic ductal cell
6
+ See 7 more…
cell line
smooth muscle cell of the coronary artery
52
8
EndoC_BH1
26
HepG2
1
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
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