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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
824
total RNA-seq
127
ATAC-seq
84
RNA microarray
27
snATAC-seq
18
single cell RNA-seq
15
WGBS
6
RRBS
5
DNase-seq
3
pCHi-C
3
snDrop-seq
1
FAIRE-seq
Assay category
842
Transcription
DNA binding
160
DNA accessibility
21
DNA methylation
Date released
707
February, 2021
291
May, 2020
276
August, 2021
233
May, 2021
205
February, 2023
200
May, 2022
187
June, 2019
168
July, 2018
115
August, 2017
108
July, 2019
72
October, 2019
61
March, 2020
59
September, 2020
49
April, 2018
48
November, 2019
47
September, 2023
41
September, 2018
25
February, 2020
19
April, 2020
18
November, 2018
16
January, 2021
16
November, 2020
15
February, 2018
15
May, 2023
10
December, 2019
8
January, 2018
8
October, 2017
7
August, 2020
5
January, 2019
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
1
August, 2022
1
December, 2018
Available data
898
bam
880
bigWig
837
tsv
151
fastq
89
txt
28
bed narrowPeak
10
bigBed narrowPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
1113
Homo sapiens
Biosample type
796
tissue
201
primary cell
89
cell line
27
in vitro differentiated cells
Organ
463
connective tissue
393
adipose tissue
153
liver
150
bone element
126
pancreas
60
artery
60
blood vessel
60
heart
60
vasculature
35
epithelium
8
kidney
8
skeleton
6
limb
4
musculature of body
Project
1023
AMP
45
HPAP
45
T1D
Genome assembly (visualization)
905
hg19
849
GRCh38
Lab
1023
AMP-T2D consortium
45
Klaus Kaestner, Upenn
45
Kyle Gaulton, UCSD
Audit category:
136
inconsistent ontology term
32
audit script error
1
inconsistent replicate
assay_slims!
DNA binding
organ_slims!
bone marrow
BIOSAMPLE
ASSAY
1113 results
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total RNA-seq
ATAC-seq
RNA microarray
snATAC-seq
single cell RNA-seq
WGBS
RRBS
DNase-seq
pCHi-C
snDrop-seq
FAIRE-seq
tissue
adipose tissue
381
3
liver
143
1
3
1
islet of Langerhans
89
1
1
bone element
84
bone tissue
58
+ See 17 more…
primary cell
Langerhans cell
27
12
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
pancreatic alpha cell
1
6
+ See 30 more…
cell line
smooth muscle cell of the coronary artery
52
8
EndoC_BH1
26
HepG2
1
2
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
1
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