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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
76
ATAC-seq
66
total RNA-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
4
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
172
Transcription
82
DNA accessibility
DNA binding
4
3D chromatin structure
1
DNA sequencing
Date released
707
February, 2021
291
May, 2020
268
August, 2021
232
May, 2021
205
February, 2023
198
May, 2022
168
July, 2018
154
June, 2019
111
August, 2017
98
July, 2019
72
October, 2019
59
September, 2020
56
March, 2020
49
April, 2018
48
November, 2019
47
September, 2023
41
September, 2018
23
February, 2020
19
April, 2020
18
November, 2018
16
January, 2021
16
November, 2020
15
May, 2023
11
February, 2018
10
December, 2019
8
October, 2017
7
August, 2020
6
January, 2018
5
January, 2019
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
1
August, 2022
1
December, 2018
Available data
115
tsv
76
bed narrowPeak
64
xls
57
txt
17
bam
9
bigWig
2
bed bed3+
2
bedpe bed3+
2
hic
1
fastq
1
vcf
Organism
268
Homo sapiens
Biosample type
229
tissue
21
in vitro differentiated cells
19
cell line
Organ
130
kidney
92
heart
14
liver
embryo
6
blood vessel
6
vasculature
5
connective tissue
4
pancreas
2
artery
2
epithelium
1
adipose tissue
Project
269
AMP
Genome assembly (visualization)
81
GRCh38
23
hg19
Lab
128
Katalin Susztak, Upenn
119
AMP-T2D consortium
18
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
assay_slims!
DNA binding
organ_slims!
embryo
musculature of body
BIOSAMPLE
ASSAY
269 results
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Clear Filters
single cell RNA-seq
ATAC-seq
total RNA-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
in vitro differentiated cells
neural progenitor cell
10
7
adipocyte
1
1
osteoblast
1
1
cell line
HepG2
9
2
2
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
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