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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
9
total RNA-seq
2
STARR-seq
1
ATAC-seq
1
Hi-C
1
pCHi-C
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
DNA binding
10
Transcription
1
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Date released
144
May, 2020
40
May, 2022
13
August, 2021
10
July, 2019
6
August, 2017
5
December, 2019
5
January, 2019
4
November, 2018
3
February, 2021
3
March, 2020
June, 2019
2
October, 2019
1
December, 2018
1
February, 2020
Available data
9
tsv
1
bam
1
bed bed3
1
bed bed3+
1
bed narrowPeak
1
bedpe bed3+
1
csv
1
hic
1
vcf
Organism
16
Homo sapiens
Biosample type
15
cell line
1
tissue
Organ
460
connective tissue
387
adipose tissue
152
heart
150
bone element
138
kidney
66
blood vessel
66
vasculature
62
artery
36
pancreas
34
epithelium
16
liver
8
embryo
8
skeleton
6
limb
Project
16
AMP
Genome assembly (visualization)
3
hg19
1
GRCh38
Lab
13
Bing Ren, UCSD
3
AMP-T2D consortium
Audit category:
1
inconsistent replicate
assay_slims!
DNA binding
month_released!
June, 2019
BIOSAMPLE
ASSAY
16 results
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total RNA-seq
STARR-seq
ATAC-seq
Hi-C
pCHi-C
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
9
2
1
1
1
1
tissue
liver
1
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