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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 106single cell RNA-seq
  • 76ATAC-seq
  • 74total RNA-seq
  • 6snATAC-seq
  • 5STARR-seq
  • 4Capture-C
  • 3Hi-C
  • 1RNA microarray
  • 1whole genome sequencing assay
Assay category
  • 180Transcription
  • 82DNA accessibility
  • DNA binding
  • 33D chromatin structure
  • 1DNA sequencing
Date released
  • 707February, 2021
  • 291May, 2020
  • 276August, 2021
  • 234May, 2021
  • 205February, 2023
  • 200May, 2022
  • 187June, 2019
  • 168July, 2018
  • 115August, 2017
  • 108July, 2019
  • 72October, 2019
  • 61March, 2020
  • 59September, 2020
  • 49April, 2018
  • 48November, 2019
  • 47September, 2023
  • 41September, 2018
  • 25February, 2020
  • 19April, 2020
  • 18November, 2018
  • 16January, 2021
  • 16November, 2020
  • 15February, 2018
  • 15May, 2023
  • 10December, 2019
  • 8January, 2018
  • 8October, 2017
  • 7August, 2020
  • 5January, 2019
  • 5March, 2019
  • 5March, 2023
  • 5September, 2017
  • 4August, 2018
  • 4October, 2022
  • 3June, 2018
  • 2October, 2018
  • 1August, 2022
  • 1December, 2018
Available data
  • 123tsv
  • 76bed narrowPeak
  • 64xls
  • 57txt
  • 25bam
  • 17bigWig
  • 2bed bed3+
  • 2bedpe bed3+
  • 2hic
  • 1vcf
Organism
  • 275Homo sapiens
Biosample type
  • 229tissue
  • 26cell line
  • 21in vitro differentiated cells
Organ
  • 130kidney
  • 92heart
  • 13liver
  • 8embryo
  • 6blood vessel
  • 6vasculature
  • 5connective tissue
  • 4pancreas
  • 2artery
  • 2epithelium
  • 1adipose tissue
Project
  • 276AMP
Genome assembly (visualization)
  • 89GRCh38
  • 31hg19
Lab
  • 128Katalin Susztak, Upenn
  • 126AMP-T2D consortium
  • 18Bing Ren, UCSD
  • 4Struan F.A. Grant, CHOP
Audit category:
  • 3inconsistent ontology term
assay_slims!
  • DNA binding
BIOSAMPLE
ASSAY

276 results

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Clear Filters
single cell RNA-seq
ATAC-seq
total RNA-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney8644961
heart left ventricle18
left cardiac atrium18
right cardiac atrium18
heart right ventricle17
cell line
HepG29211
H1-hESC8
EndoC_BH12
HEK293T2
Synthesized DNA1
in vitro differentiated cells
neural progenitor cell107
adipocyte11
osteoblast11
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