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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
MeRIP-seq
5
GRO-seq
4
ATAC-seq
4
total RNA-seq
1
DNase-seq
Assay category
5
DNA accessibility
4
Transcription
Target of assay
5
control
5
nucleotide modification
Date released
707
February, 2021
291
May, 2020
276
August, 2021
234
May, 2021
205
February, 2023
200
May, 2022
187
June, 2019
168
July, 2018
115
August, 2017
108
July, 2019
72
October, 2019
61
March, 2020
59
September, 2020
49
April, 2018
48
November, 2019
47
September, 2023
41
September, 2018
25
February, 2020
19
April, 2020
18
November, 2018
16
January, 2021
16
November, 2020
15
February, 2018
15
May, 2023
10
December, 2019
8
January, 2018
October, 2017
7
August, 2020
5
January, 2019
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
1
August, 2022
1
December, 2018
Available data
13
bigWig
6
bam
5
fastq
4
tsv
2
bed narrowPeak
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
24
Homo sapiens
Biosample type
7
cell line
6
primary cell
6
tissue
4
in vitro differentiated cells
1
stem cell
Organ
10
pancreas
7
connective tissue
6
epithelium
1
adipose tissue
1
blood
1
bodily fluid
1
embryo
1
musculature of body
Project
24
AMP
Genome assembly (visualization)
9
hg19
6
GRCh38
5
hg18
Lab
14
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
assay_slims!
DNA binding
month_released!
October, 2017
BIOSAMPLE
ASSAY
24 results
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MeRIP-seq
GRO-seq
ATAC-seq
total RNA-seq
DNase-seq
cell line
EndoC_BH1
6
GM12878
1
primary cell
osteoblast
1
4
1
tissue
islet of Langerhans
4
adipose tissue
1
skeletal muscle tissue
1
in vitro differentiated cells
Posterior foregut
1
definitive endodermal cell
1
pancreatic endoderm
1
primitive gut cell
1
stem cell
hESC
1
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