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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
145
total RNA-seq
48
single cell RNA-seq
26
ATAC-seq
2
Hi-C
Assay category
193
Transcription
DNA binding
26
DNA accessibility
2
3D chromatin structure
Date released
707
February, 2021
291
May, 2020
276
August, 2021
234
May, 2021
205
February, 2023
200
May, 2022
187
June, 2019
168
July, 2018
115
August, 2017
108
July, 2019
72
October, 2019
61
March, 2020
59
September, 2020
49
April, 2018
48
November, 2019
47
September, 2023
41
September, 2018
25
February, 2020
19
April, 2020
18
November, 2018
16
January, 2021
16
November, 2020
15
February, 2018
15
May, 2023
10
December, 2019
8
January, 2018
8
October, 2017
7
August, 2020
5
January, 2019
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
1
August, 2022
1
December, 2018
Available data
215
bam
189
bigWig
189
tsv
55
fastq
26
bed narrowPeak
2
bedpe bed3+
2
hic
Organism
221
Homo sapiens
Biosample type
160
tissue
48
primary cell
8
cell line
5
in vitro differentiated cells
Organ
199
pancreas
36
epithelium
5
liver
3
connective tissue
1
adipose tissue
Project
221
AMP
Genome assembly (visualization)
217
hg19
215
GRCh38
Lab
221
AMP-T2D consortium
Audit category:
15
inconsistent ontology term
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
221 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
Hi-C
tissue
islet of Langerhans
139
19
1
adipose tissue(adipose white tissue)
1
primary cell
pancreatic beta cell
9
pancreatic alpha cell
7
pancreatic acinar cell
5
pancreatic delta cell
4
pancreatic cell
3
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cell line
HepG2
5
EndoC_BH1
1
1
1
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
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