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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 30total RNA-seq
  • 22ATAC-seq
  • 10DNase-seq
  • 5Hi-C
  • 4pCHi-C
  • 1FAIRE-seq
Assay category
  • DNA binding
  • 33DNA accessibility
  • 30Transcription
  • 53D chromatin structure
Date released
  • 707February, 2021
  • 291May, 2020
  • 276August, 2021
  • 234May, 2021
  • 205February, 2023
  • 200May, 2022
  • 187June, 2019
  • 168July, 2018
  • 115August, 2017
  • 108July, 2019
  • 72October, 2019
  • 61March, 2020
  • 59September, 2020
  • 49April, 2018
  • 48November, 2019
  • 47September, 2023
  • 41September, 2018
  • 25February, 2020
  • 19April, 2020
  • 18November, 2018
  • 16January, 2021
  • 16November, 2020
  • 15February, 2018
  • 15May, 2023
  • 10December, 2019
  • 8January, 2018
  • 8October, 2017
  • 7August, 2020
  • 5January, 2019
  • 5March, 2019
  • 5March, 2023
  • 5September, 2017
  • 4August, 2018
  • 4October, 2022
  • 3June, 2018
  • 2October, 2018
  • 1August, 2022
  • 1December, 2018
Available data
  • 31bam
  • 31bigWig
  • 16tsv
  • 15bed narrowPeak
  • 12bigBed narrowPeak
  • 8bed bed3+
  • 7bed broadPeak
  • 7bigBed broadPeak
  • 4hic
  • 3bedpe bed3+
  • 1hdf5
  • 1tar
Organism
  • 72Homo sapiens
Biosample type
  • 47tissue
  • 10primary cell
  • 8in vitro differentiated cells
  • 7cell line
Organ
  • 19eye
  • 11epithelium
  • 10limb
  • 9kidney
  • 7blood vessel
  • 7nerve
  • 7vasculature
  • 5pancreas
  • 4vein
  • 3artery
  • 3connective tissue
  • 3heart
  • 2brain
  • 2liver
  • 1adipose tissue
  • 1pituitary gland
  • 1skin of body
Project
  • 72AMP
Genome assembly (visualization)
  • 39hg19
  • 31GRCh38
Lab
  • 72AMP-T2D consortium
Audit category:
  • 11inconsistent ontology term
  • 1audit script error
Audit category:
  • 1inconsistent assembly
assay_slims!
  • DNA binding
BIOSAMPLE
ASSAY

72 results

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Clear Filters
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
pCHi-C
FAIRE-seq
tissue
islet of Langerhans14134
tibial nerve412
heart21
tibial artery12
adipose tissue1
primary cell
endothelial cell of umbilical vein211
kidney glomerular epithelial cell11
kidney tubule cell11
Heart fetal (cardiac muscle cell)1
Liver fetal (hepatocyte)1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)111
cardiomyocytes (cardiac muscle cell)111
adipocyte2
cell line
Panc111
glomerular visceral epithelial cell11
RCC 7860 HIF1a re-expression1
RCC 7860 HIF2a over-expression1
RCC 7860 vector1
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