Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 398total RNA-seq
  • 6ATAC-seq
  • 6WGBS
  • 3small RNA-seq
  • 2DNase-seq
  • 2pCHi-C
  • 1RNA microarray
Assay category
  • 401Transcription
  • DNA binding
  • 8DNA accessibility
  • 6DNA methylation
Date released
  • 386February, 2021
  • 12July, 2019
  • 7August, 2017
  • 2February, 2020
  • 1August, 2018
  • 1August, 2021
  • 1February, 2023
  • 1January, 2018
  • 1June, 2019
  • 1March, 2020
  • 1May, 2023
  • 1November, 2018
  • 1November, 2019
  • 1October, 2017
  • 1October, 2019
Available data
  • 406bigWig
  • 405bam
  • 401tsv
  • 7fastq
  • 6bed narrowPeak
  • 4bigBed narrowPeak
  • 2bed bed3+
  • 2bed bedMethyl
  • 2bed broadPeak
  • 2bigBed bedMethyl
  • 2bigBed broadPeak
  • 1bedpe bed3+
Organism
  • 417Homo sapiens
Biosample type
  • 415tissue
  • 2primary cell
  • 1in vitro differentiated cells
Organ
  • 728pancreas
  • 531connective tissue
  • 418adipose tissue
  • 395epithelium
  • 302kidney
  • 259heart
  • 239liver
  • 159bone element
  • 134vasculature
  • 131blood vessel
  • 107artery
  • 68brain
  • 57musculature of body
  • 56eye
  • 56limb
  • 20lung
  • 18ureter
  • 16skeleton
  • 15embryo
  • 9blood
  • 9bodily fluid
  • 8nerve
  • 5spleen
  • 5vein
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1mammary gland
  • 1ovary
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 418AMP
Genome assembly (visualization)
  • 407hg19
  • 406GRCh38
Lab
  • 418AMP-T2D consortium
Audit category:
  • 1inconsistent ontology term
assay_slims!
  • DNA binding
BIOSAMPLE
ASSAY

418 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
WGBS
small RNA-seq
DNase-seq
pCHi-C
RNA microarray
tissue
adipose tissue382331
subcutaneous adipose tissue7111
omental fat pad5112
subcutaneous abdominal adipose tissue3
visceral abdominal adipose tissue3
primary cell
mesenchymal stem cell of adipose11
in vitro differentiated cells
white fat cell1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego