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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
46
ATAC-seq
23
DNase-seq
2
WGBS
2
single cell RNA-seq
1
pCHi-C
Assay category
69
DNA accessibility
58
Transcription
DNA binding
2
DNA methylation
Date released
60
February, 2021
35
February, 2023
20
June, 2019
3
July, 2019
3
November, 2018
3
October, 2019
2
August, 2021
2
February, 2020
1
March, 2020
1
October, 2017
Available data
90
bam
82
bigWig
69
bed narrowPeak
59
tsv
23
bed bed3+
23
bed broadPeak
23
bigBed broadPeak
23
bigBed narrowPeak
4
fastq
2
bed bedMethyl
2
bigBed bedMethyl
Organism
130
Homo sapiens
Biosample type
68
tissue
60
cell line
2
primary cell
Organ
728
pancreas
531
connective tissue
418
adipose tissue
395
epithelium
302
kidney
259
heart
239
liver
159
bone element
134
vasculature
131
blood vessel
107
artery
68
brain
57
musculature of body
56
eye
56
limb
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
130
AMP
Genome assembly (visualization)
125
GRCh38
88
hg19
Lab
130
AMP-T2D consortium
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
130 results
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total RNA-seq
ATAC-seq
DNase-seq
WGBS
single cell RNA-seq
pCHi-C
tissue
coronary artery
1
36
2
renal pelvis
10
spleen
1
1
2
1
left renal pelvis
4
right renal pelvis
4
+ See 2 more…
cell line
smooth muscle cell of the coronary artery
52
8
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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