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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
62
total RNA-seq
12
ATAC-seq
2
DNase-seq
2
Hi-C
1
FAIRE-seq
Assay category
62
Transcription
DNA binding
15
DNA accessibility
2
3D chromatin structure
Date released
150
February, 2021
8
February, 2023
4
October, 2019
1
March, 2020
Available data
88
txt
69
bam
61
bigWig
58
tsv
11
bed narrowPeak
4
bed bed3
3
bigBed narrowPeak
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
2
hic
1
bedpe bed3+
1
tar
Organism
163
Homo sapiens
Biosample type
158
tissue
5
primary cell
Organ
728
pancreas
531
connective tissue
418
adipose tissue
395
epithelium
302
kidney
259
heart
239
liver
159
bone element
134
vasculature
131
blood vessel
107
artery
68
brain
57
musculature of body
56
eye
56
limb
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
urinary bladder
Project
163
AMP
Genome assembly (visualization)
75
hg19
68
GRCh38
Lab
163
AMP-T2D consortium
Audit category:
84
inconsistent ontology term
1
audit script error
assay_slims!
DNA binding
organ_slims!
bone marrow
urinary bladder
BIOSAMPLE
ASSAY
163 results
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RNA microarray
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
FAIRE-seq
tissue
bone element
84
bone tissue
58
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
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primary cell
endothelial cell of umbilical vein
2
2
1
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