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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
DNase-seq
36
total RNA-seq
32
ATAC-seq
6
pCHi-C
4
small RNA-seq
3
Hi-C
3
RRBS
3
single cell RNA-seq
1
FAIRE-seq
Assay category
DNA binding
69
DNA accessibility
43
Transcription
3
3D chromatin structure
3
DNA methylation
Target of assay
3
control
Date released
34
June, 2019
32
February, 2023
21
October, 2019
19
July, 2019
13
February, 2020
2
March, 2020
2
November, 2018
1
October, 2017
Available data
64
bed narrowPeak
54
bigWig
51
bam
39
bed bed3+
37
bigBed narrowPeak
36
bed broadPeak
36
bigBed broadPeak
31
tsv
3
bed bedMethyl
3
bigBed bedMethyl
3
fastq
3
hdf5
1
bed bed3
Organism
124
Homo sapiens
Biosample type
110
tissue
14
primary cell
Organ
728
pancreas
531
connective tissue
418
adipose tissue
395
epithelium
302
kidney
heart
239
liver
159
bone element
134
vasculature
131
blood vessel
107
artery
68
brain
57
musculature of body
56
eye
56
limb
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
124
AMP
Genome assembly (visualization)
73
hg19
50
GRCh38
Lab
124
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_slims!
DNA binding
organ_slims!
heart
BIOSAMPLE
ASSAY
124 results
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DNase-seq
total RNA-seq
ATAC-seq
pCHi-C
small RNA-seq
Hi-C
RRBS
single cell RNA-seq
FAIRE-seq
tissue
retina
3
3
15
islet of Langerhans
14
2
4
brain
14
1
1
1
pigmented layer of retina
2
12
frontal cortex
2
2
1
1
+ See 22 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
+ See 3 more…
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