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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 33DNase-seq
  • 6Hi-C
  • 6total RNA-seq
  • 5RRBS
  • 2small RNA-seq
  • 2snATAC-seq
  • 1ATAC-seq
  • 1WGBS
  • 1pCHi-C
  • 1single cell RNA-seq
Assay category
  • DNA binding
  • 36DNA accessibility
  • 9Transcription
  • 63D chromatin structure
  • 6DNA methylation
Date released
  • 33June, 2019
  • 10July, 2019
  • 5March, 2020
  • 4August, 2017
  • 2February, 2020
  • 2May, 2022
  • 1January, 2018
  • 1July, 2025
Available data
  • 41bigWig
  • 40bam
  • 35bed bed3+
  • 33bed broadPeak
  • 33bed narrowPeak
  • 33bigBed broadPeak
  • 33bigBed narrowPeak
  • 10tsv
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 2bedpe bed3+
  • 2fastq
  • 2hic
  • 1tbi
  • 1txt
Organism
  • 57Homo sapiens
Biosample type
  • 54tissue
  • 4primary cell
Organ
  • 728pancreas
  • 531connective tissue
  • 418adipose tissue
  • 348epithelium
  • 302kidney
  • 259heart
  • 239liver
  • 159bone element
  • 134vasculature
  • 131blood vessel
  • 107artery
  • 68brain
  • 58musculature of body
  • 56eye
  • 56limb
  • 20lung
  • 18ureter
  • 16skeleton
  • 15embryo
  • 9blood
  • 9bodily fluid
  • 8nerve
  • 5spleen
  • 5vein
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1mammary gland
  • 1ovary
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 58AMP
Genome assembly (visualization)
  • 46hg19
  • 41GRCh38
Lab
  • 57AMP-T2D consortium
  • 1Stephen Parker, UMich
Audit category:
  • 1audit script error
  • 1inconsistent ontology term
assay_slims!
  • DNA binding
BIOSAMPLE
ASSAY

58 results

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Clear Filters
DNase-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
snATAC-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
tissue
muscle of arm17
muscle of leg131
skeletal muscle tissue141211
gastrocnemius medialis41
psoas muscle221
forelimb muscle1
hindlimb muscle1
left ventricle myocardium1
primary cell
skeletal muscle cell11
skeletal muscle satellite cell11
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