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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 61total RNA-seq
  • 46ATAC-seq
  • 11DNase-seq
  • 6single cell RNA-seq
  • 5Hi-C
  • 2WGBS
  • 1FAIRE-seq
  • 1RRBS
  • 1pCHi-C
Assay category
  • DNA binding
  • 67Transcription
  • 58DNA accessibility
  • 53D chromatin structure
  • 3DNA methylation
Date released
  • 60February, 2021
  • 35February, 2023
  • 12July, 2019
  • 7June, 2019
  • 7October, 2019
  • 6August, 2021
  • 4March, 2020
  • 3February, 2020
Available data
  • 83bam
  • 76bigWig
  • 68tsv
  • 58bed narrowPeak
  • 13bed bed3+
  • 12bigBed narrowPeak
  • 11bed broadPeak
  • 11bigBed broadPeak
  • 3hic
  • 2bed bedMethyl
  • 2bedpe bed3+
  • 2bigBed bedMethyl
  • 2hdf5
  • 1tar
Organism
  • 134Homo sapiens
Biosample type
  • 60cell line
  • 60tissue
  • 14primary cell
Organ
  • 728pancreas
  • 531connective tissue
  • 418adipose tissue
  • 395epithelium
  • 302kidney
  • 259heart
  • 239liver
  • 159bone element
  • 134vasculature
  • 131blood vessel
  • 107artery
  • 68brain
  • 57musculature of body
  • 56eye
  • 56limb
  • 20lung
  • 18ureter
  • 16skeleton
  • 15embryo
  • 9blood
  • 9bodily fluid
  • 8nerve
  • 5spleen
  • 5vein
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1mammary gland
  • 1ovary
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 134AMP
Genome assembly (visualization)
  • 116GRCh38
  • 86hg19
Lab
  • 134AMP-T2D consortium
Audit category:
  • 1audit script error
  • 1inconsistent ontology term
assay_slims!
  • DNA binding
BIOSAMPLE
ASSAY

134 results

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Clear Filters
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
WGBS
FAIRE-seq
RRBS
pCHi-C
cell line
smooth muscle cell of the coronary artery528
tissue
coronary artery1362
aorta14121
tibial artery112
ascending aorta21
thoracic aorta21
primary cell
endothelial cell of umbilical vein221
brain microvascular endothelial cell11
choroid plexus epithelial cell11
endothelial cell of coronary artery1
endothelial cell of hepatic sinusoid1
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