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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
67
ChIP-seq
17
ATAC-seq
2
Capture-C
1
DNase-seq
1
pCHi-C
Assay category
67
DNA binding
18
DNA accessibility
Transcription
Target of assay
37
histone
37
histone modification
22
transcription factor
20
broad histone mark
16
narrow histone mark
8
control
4
RNA binding protein
2
chromatin remodeller
Date released
68
August, 2017
9
February, 2023
4
August, 2021
4
February, 2021
2
October, 2019
1
August, 2018
Available data
55
fastq
54
bam
52
bigWig
45
bed narrowPeak
14
tagAlign
13
bed bed3+
5
bed bed3
4
bed bedgraph
3
bigBed narrowPeak
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
Organism
88
Homo sapiens
Biosample type
88
in vitro differentiated cells
84
tissue
23
primary cell
1
stem cell
Organ
88
connective tissue
23
embryo
22
epithelium
15
liver
3
pancreas
1
adipose tissue
Project
88
AMP
Genome assembly (visualization)
68
hg19
49
GRCh38
Lab
84
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
6
inconsistent control read length
assay_slims!
DNA methylation
Transcription
BIOSAMPLE
ASSAY
88 results
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ChIP-seq
ATAC-seq
Capture-C
DNase-seq
pCHi-C
in vitro differentiated cells
adipocyte
67
8
1
1
chondrocyte
5
immature adipocyte
2
osteoblast
1
1
preadipocyte
1
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