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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
ATAC-seq
31
ChIP-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
Transcription
82
DNA accessibility
31
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
20
histone
20
histone modification
control
11
narrow histone mark
11
transcription factor
9
broad histone mark
1
RNA binding protein
Date released
332
November, 2017
257
August, 2017
244
October, 2019
210
June, 2019
207
May, 2021
143
February, 2021
128
May, 2020
127
August, 2021
111
February, 2023
99
May, 2022
97
May, 2019
74
November, 2018
73
December, 2017
66
April, 2019
49
March, 2020
46
September, 2018
45
October, 2018
40
May, 2024
39
November, 2019
31
December, 2018
21
January, 2019
20
October, 2017
16
February, 2018
16
January, 2021
16
July, 2019
11
May, 2023
10
April, 2020
8
January, 2018
7
August, 2020
7
November, 2020
5
March, 2019
5
September, 2017
4
October, 2022
3
September, 2020
2
December, 2019
1
August, 2018
1
August, 2022
1
March, 2023
Available data
106
bed narrowPeak
64
xls
32
bigWig
26
bam
16
tagAlign
5
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
126
Homo sapiens
Biosample type
73
tissue
28
in vitro differentiated cells
23
cell line
3
primary cell
Organ
73
kidney
21
liver
5
connective tissue
5
epithelium
3
pancreas
1
adipose tissue
Project
127
AMP
Genome assembly (visualization)
90
GRCh38
45
hg19
Lab
71
Katalin Susztak, Upenn
30
AMP-T2D consortium
22
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
assay_slims!
DNA methylation
Transcription
files.file_type!
tar
target.investigated_as!
control
BIOSAMPLE
ASSAY
127 results
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Clear Filters
ATAC-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
64
6
1
islet of Langerhans
1
subcutaneous adipose tissue
1
in vitro differentiated cells
neural progenitor cell
10
14
adipocyte
1
1
osteoblast
1
1
cell line
HepG2
14
2
1
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
primary cell
hepatocyte
3
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