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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
114
ChIP-seq
ATAC-seq
29
DNase-seq
1
FAIRE-seq
Assay category
114
DNA binding
30
DNA accessibility
Target of assay
216
histone
216
histone modification
broad histone mark
104
narrow histone mark
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
50
May, 2021
39
June, 2019
18
August, 2017
15
September, 2018
11
October, 2019
6
November, 2017
2
August, 2021
2
May, 2019
1
November, 2020
Available data
425
bam
417
bigWig
337
fastq
252
tsv
144
bed narrowPeak
73
zippedFastqFolder
66
bigBed narrowPeak
49
tagAlign
41
bed broadPeak
41
bigBed broadPeak
36
bed bed3+
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
tar
Organism
144
Homo sapiens
Biosample type
523
tissue
377
cell line
144
primary cell
74
in vitro differentiated cells
1
stem cell
Organ
56
epithelium
23
pancreas
17
kidney
16
vasculature
12
blood vessel
11
brain
11
connective tissue
8
vein
6
heart
5
musculature of body
4
liver
3
eye
Project
104
AMP
40
T1D
Genome assembly (visualization)
137
hg19
130
GRCh38
Lab
94
AMP-T2D consortium
50
Kyle Gaulton, UCSD
Audit category:
15
inconsistent ontology term
Audit category:
15
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
assay_slims!
DNA methylation
assay_title!
ATAC-seq
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
144 results
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ChIP-seq
DNase-seq
FAIRE-seq
primary cell
monocyte
40
CD8-positive, alpha-beta T cell
10
skeletal muscle myoblast
8
2
endothelial cell of umbilical vein
5
2
1
pancreatic ductal cell
7
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