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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
167
ChIP-seq
89
total RNA-seq
5
DNase-seq
ATAC-seq
1
FAIRE-seq
Assay category
167
DNA binding
89
Transcription
DNA methylation
6
DNA accessibility
Target of assay
185
histone modification
184
histone
broad histone mark
80
narrow histone mark
47
transcription factor
38
control
8
RNA binding protein
3
chromatin remodeller
Date released
661
February, 2021
350
November, 2017
278
May, 2021
262
August, 2017
241
May, 2020
229
August, 2021
215
October, 2019
190
June, 2019
135
July, 2018
82
May, 2022
81
November, 2018
68
July, 2019
67
December, 2017
62
February, 2023
59
May, 2019
56
March, 2020
55
October, 2018
47
September, 2023
43
April, 2019
40
September, 2020
35
December, 2018
31
February, 2018
26
January, 2019
25
February, 2020
20
May, 2024
20
November, 2019
19
April, 2020
16
April, 2018
16
January, 2021
9
November, 2020
6
September, 2017
5
January, 2018
5
March, 2023
5
October, 2017
5
September, 2018
4
December, 2019
4
May, 2023
2
June, 2018
1
August, 2018
1
August, 2022
1
March, 2019
1
October, 2022
Available data
206
bam
205
fastq
196
bigWig
89
tsv
73
bed narrowPeak
40
tagAlign
27
bed bed3+
19
bed broadPeak
19
bigBed narrowPeak
9
bigBed broadPeak
Organism
259
Homo sapiens
Biosample type
195
tissue
48
in vitro differentiated cells
19
primary cell
Organ
153
pancreas
78
connective tissue
30
adipose tissue
30
liver
epithelium
10
musculature of body
Project
262
AMP
Genome assembly (visualization)
198
hg19
185
GRCh38
Lab
262
AMP-T2D consortium
Audit category:
34
missing controlled_by
Audit category:
9
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
assay_slims!
DNA methylation
assay_title!
ATAC-seq
organ_slims!
epithelium
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
262 results
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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
28
89
1
1
liver
29
subcutaneous abdominal adipose tissue
16
white adipose tissue
12
skeletal muscle tissue
10
+ See 3 more…
in vitro differentiated cells
adipocyte
47
1
primary cell
skeletal muscle myoblast
9
2
pancreatic endocrine cell
8
See all biosamples
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