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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
687
ChIP-seq
231
ATAC-seq
174
single cell RNA-seq
168
DNase-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
16
Hi-C
16
small RNA-seq
4
MeRIP-seq
3
snDrop-seq
2
FAIRE-seq
Assay category
687
DNA binding
429
DNA accessibility
190
Transcription
DNA methylation
16
3D chromatin structure
Target of assay
554
histone
554
histone modification
296
narrow histone mark
258
broad histone mark
120
control
15
transcription factor
13
RNA binding protein
2
nucleotide modification
Date released
220
October, 2019
179
August, 2021
163
June, 2019
115
May, 2019
102
August, 2017
101
February, 2021
82
February, 2023
82
November, 2017
80
April, 2019
50
May, 2020
47
September, 2023
40
May, 2024
31
March, 2020
28
July, 2019
22
May, 2022
21
November, 2019
19
April, 2020
16
October, 2018
14
May, 2023
8
January, 2021
6
October, 2017
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
May, 2021
Available data
989
bam
984
bed narrowPeak
861
bigWig
561
bigBed narrowPeak
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
151
tsv
98
txt
64
xls
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1439
Homo sapiens
Biosample type
1441
tissue
501
primary cell
132
in vitro differentiated cells
127
cell line
5
stem cell
Organ
289
heart
248
kidney
235
brain
124
blood vessel
124
vasculature
114
limb
105
liver
104
pancreas
96
bone element
72
musculature of body
71
artery
46
connective tissue
45
adipose tissue
38
nerve
37
eye
20
lung
18
ureter
13
epithelium
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spleen
1
stomach
1
urinary bladder
Project
1351
AMP
47
KPMP
24
T1D
19
LungMap
Genome assembly (visualization)
766
GRCh38
650
hg19
Lab
1191
AMP-T2D consortium
93
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
22
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
90
inconsistent ontology term
9
audit script error
assay_slims!
DNA methylation
assay_title!
CRISPRi RNA-seq
total RNA-seq
files.file_type!
fastq
BIOSAMPLE
ASSAY
1441 results
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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
MeRIP-seq
snDrop-seq
FAIRE-seq
tissue
kidney
27
75
64
13
6
1
1
islet of Langerhans
43
48
7
4
3
4
liver
78
20
1
1
1
1
bone element
84
heart left ventricle
35
2
18
3
1
1
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