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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
231
total RNA-seq
197
ATAC-seq
147
single cell RNA-seq
56
snATAC-seq
31
DNase-seq
17
pCHi-C
10
Hi-C
2
small RNA-seq
1
FAIRE-seq
Assay category
380
Transcription
285
DNA accessibility
DNA methylation
10
3D chromatin structure
Target of assay
3
control
Date released
147
May, 2020
93
May, 2022
88
February, 2023
84
May, 2021
September, 2020
48
July, 2018
43
April, 2018
42
February, 2021
41
September, 2018
24
June, 2019
22
July, 2019
10
October, 2019
8
January, 2021
7
August, 2020
6
November, 2020
5
August, 2017
5
December, 2019
5
September, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
367
bam
363
bigWig
267
fastq
264
tsv
93
zippedFastqFolder
69
bed narrowPeak
52
bigBed narrowPeak
34
bed bed3+
28
bed broadPeak
28
bigBed broadPeak
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
692
Homo sapiens
Biosample type
1745
tissue
692
primary cell
196
in vitro differentiated cells
177
cell line
7
stem cell
Organ
242
epithelium
210
pancreas
26
connective tissue
18
kidney
13
vasculature
11
blood vessel
11
brain
9
liver
8
blood
8
bodily fluid
7
heart
5
vein
3
musculature of body
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
eye
1
pericardium
Project
353
AMP
218
HPAP
120
T1D
1
ITG
Genome assembly (visualization)
371
hg19
326
GRCh38
Lab
351
AMP-T2D consortium
218
Klaus Kaestner, Upenn
122
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
27
inconsistent ontology term
assay_slims!
DNA methylation
assay_title!
ChIP-seq
RNA microarray
month_released!
September, 2020
BIOSAMPLE
ASSAY
692 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
DNase-seq
pCHi-C
Hi-C
small RNA-seq
FAIRE-seq
primary cell
Langerhans cell
45
48
pancreatic alpha cell
37
33
12
1
monocyte
54
15
1
pancreatic beta cell
20
22
12
1
exocrine cell
39
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