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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
ChIP-seq
260
ATAC-seq
178
DNase-seq
174
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
16
Hi-C
16
small RNA-seq
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1221
Transcription
470
DNA accessibility
DNA methylation
16
3D chromatin structure
Target of assay
2
control
2
nucleotide modification
Date released
539
February, 2021
229
August, 2021
163
June, 2019
143
May, 2020
120
July, 2018
95
February, 2023
94
August, 2017
66
May, 2022
59
July, 2019
47
October, 2019
47
September, 2023
40
May, 2021
40
November, 2019
38
March, 2020
25
February, 2020
19
April, 2020
15
May, 2023
10
November, 2018
8
January, 2021
8
October, 2017
6
April, 2018
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1168
bam
1141
bigWig
1076
tsv
389
bed narrowPeak
184
bigBed narrowPeak
178
bed broadPeak
177
bed bed3+
176
bigBed broadPeak
157
txt
144
fastq
64
xls
11
hic
10
bedpe bed3+
csv
5
bed bed3
1
bedpe
Organism
1824
Homo sapiens
Biosample type
1826
tissue
749
primary cell
196
in vitro differentiated cells
172
cell line
7
stem cell
Organ
467
connective tissue
409
adipose tissue
382
pancreas
266
kidney
200
liver
181
heart
158
bone element
58
blood vessel
58
vasculature
55
brain
55
limb
54
eye
48
musculature of body
45
artery
20
lung
18
ureter
16
skeleton
15
epithelium
8
nerve
3
spleen
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1731
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1253
GRCh38
1217
hg19
Lab
1514
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
4
audit script error
assay_slims!
DNA methylation
assay_title!
ChIP-seq
files.file_type!
csv
month_released!
January, 2019
BIOSAMPLE
ASSAY
1826 results
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total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
adipose tissue
382
3
1
islet of Langerhans
292
68
1
6
7
4
3
1
4
kidney
49
75
13
59
6
1
1
liver
167
20
2
1
1
1
bone element
84
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