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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
151
ATAC-seq
55
ChIP-seq
51
single cell RNA-seq
29
snATAC-seq
17
pCHi-C
9
Hi-C
5
total RNA-seq
3
DNase-seq
1
FAIRE-seq
Assay category
184
DNA accessibility
56
Transcription
55
DNA binding
DNA methylation
9
3D chromatin structure
Target of assay
39
histone
39
histone modification
26
broad histone mark
16
control
13
narrow histone mark
Date released
102
May, 2020
93
May, 2022
56
May, 2021
18
September, 2020
12
February, 2023
12
October, 2019
8
January, 2021
8
June, 2019
4
July, 2019
3
October, 2022
1
August, 2017
1
August, 2021
1
February, 2021
1
March, 2020
1
May, 2019
Available data
fastq
112
zippedFastqFolder
94
bigWig
84
bam
34
bed narrowPeak
12
tsv
7
bed bed3+
5
hic
4
bed broadPeak
4
bedpe bed3+
4
bigBed broadPeak
4
bigBed narrowPeak
4
hdf5
3
cool
2
csv
2
tagAlign
1
tar
Organism
321
Homo sapiens
Biosample type
804
tissue
321
primary cell
106
in vitro differentiated cells
92
cell line
6
stem cell
Organ
61
epithelium
42
pancreas
12
blood vessel
12
vasculature
10
vein
8
blood
8
bodily fluid
6
connective tissue
5
kidney
3
brain
2
heart
2
liver
2
musculature of body
1
bone element
1
bone marrow
1
eye
Project
183
AMP
114
HPAP
24
T1D
Genome assembly (visualization)
393
hg19
GRCh38
Lab
148
AMP-T2D consortium
114
Klaus Kaestner, Upenn
59
Kyle Gaulton, UCSD
Audit category:
16
inconsistent ontology term
4
audit script error
assay_slims!
DNA methylation
assay_title!
DNAme array
assembly!
GRCh38
files.file_type!
fastq
BIOSAMPLE
ASSAY
321 results
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ATAC-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
pCHi-C
Hi-C
total RNA-seq
DNase-seq
FAIRE-seq
primary cell
Langerhans cell
51
21
CD8-positive, alpha-beta T cell
2
33
1
2
naive thymus-derived CD4-positive, alpha-beta T cell
22
2
1
1
pancreatic alpha cell
22
1
CD4-positive, alpha-beta memory T cell
22
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